RnoINT0056330 @ rn6
Intron Retention
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56815282-56815885:+
Coord C1 exon
chr3:56815282-56815312
Coord A exon
chr3:56815313-56815836
Coord C2 exon
chr3:56815837-56815885
Length
524 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TATTCCTACTTCTGTTTTAGGCA
3' ss Score
10
Exon sequences
Seq C1 exon
CAACTACCTAGACAAGACCGAAGTTGTAAAG
Seq A exon
GTAAAGGAGCTGGGGGCAGAGTTCAGTTTGTACAGTGCCTGCCTAGCATGCACACAGGAAGCCCTGGTATCCACCCAGCCTGGACAGACTGGCACTGTTGCACGTGCCTGTCATCCATGTCCTTGGTCACTCTGGCTTATGAGCCTACCCTTGTCCTGGTTAAGCCGTTTCTCCACCTCAGTCCTAATACTTGGGAGGGCAAAGCAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGTTCAGGGTCACCCACGGCTACATAGTAGGATCAAGGCCAGCCATGAGGGCATAAAGAAGCCTTGTCTCAAAAGAAAGGAAATAAAATGTGCATTGCTGGAGGTTTCGTTCTTGCTGTTGTGGTTGTTTTTAGAATGCTTTGGTCAGATTTACCATCCATTTATAAGGTTTAGAAACAGTTGACTTTAGTACATATTATACAATAGAAATATGTTTTCAAAATCCTTCAAACTAAAATAATAATTGTAGTTTTTATTCCTACTTCTGTTTTAG
Seq C2 exon
GCACCCAAAAGCAGACAGAATGGCAGGTTGCTACTGTGTGATCCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087:ENSRNOT00000077551:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]