MmuINT0004833 @ mm9
Intron Retention
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70360537-70361149:+
Coord C1 exon
chr2:70360537-70360564
Coord A exon
chr2:70360565-70361100
Coord C2 exon
chr2:70361101-70361149
Length
536 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TATTCCTGCTTCTATTTTAGGCA
3' ss Score
10.3
Exon sequences
Seq C1 exon
CAACTACCTGGACAAGACTGATGTGCAG
Seq A exon
GTAAAGCATTCGGGGGCTGGGGGCGGAGCTTAGCTGGTACAGTGTCTGCCTAGCATGCGCACAGGAAGCCCTGATGTCAACCCCCCAGCCTGCACAAACTGACATAGCTGCACACTCCTGTCATCTTTGGTTTTGTTCATTTTGAACTATAAGCCTACCCTTGTAATGGCTAAGCCATTTCTCCACCTCAGTCCTGACACTTGGGAGGGGAAAGAAAAAAATTGGATGTTCAGAATTGTCCATGGCTACATAGTAAGATCAAGGCCAGCCACAAACGCATAAATATGCCTCGTCTCAAAAAATTTTTAAAAAGTAAATAAAATGTGTATTGCCGGAGATTCTGTTCTTGTTTTGTTTTTGTTTTTAGAATACTTTGTGTCAGCTTTACCATCCATTTATAAGGTTTAGAAATAATTGGCTTTAGAATATATTATACAATAGAAATATTTACATAGAGGGTCATAATATATTTTTCCAAATACTTCAAACTAAAATAATAATGATAATTCTAGTTTTTATTCCTGCTTCTATTTTAG
Seq C2 exon
GCATCAAAAAGCAGACAGAATGGCAGATTGCTATTGTATGATCCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-4933404M02Rik:NM_025744:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: