HsaINT1002002 @ hg38
Intron Retention
Gene
ENSG00000225111 | AC083900.1
Description
NA
Coordinates
chr2:207868582-207869915:-
Coord C1 exon
chr2:207869808-207869915
Coord A exon
chr2:207868943-207869807
Coord C2 exon
chr2:207868582-207868942
Length
865 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CCCTGTTTTCTTATTTACAGCAA
3' ss Score
9.7
Exon sequences
Seq C1 exon
CCAATGCTGACCATCTTGACCAGAATAGAAGAGGGAGGCAAAATGTGTGTATCCCTGAGCTGGAAGTTCAACCAGGCAGATTTCATGGGCTTCTTTCACACAAGAAGG
Seq A exon
GTAAGCATATTTGACATATTTGTCAGGGACTGGATGGTGGAAAGTGATATTTGGCAGTTCCTTGAGTTCTAGAAGTACCTAAAATGATGGTGAAAAGAATTTATAGACAGACTGCAAAGGTGGAAAAATAGCAAAATCTGGAAGCCGATACAAGCTTGATGCTACATTTTGTCTTTGTGTTACAGGGCAATAAAGTGACCTAATTTTGTTACAAATGAAAATGTGTATTCTTTGAATACCCAGTTAGTATAACACCTCTGAAATAGTCATATATACACACTCCCCAAGTAAATAAATCAGACTAGTACCTTCCTTAGTACAAGACATTAAGTTTAATGGAAAACAGAAACAAACTTTCACCCTATTTTGGACATCTGCCTTTTCTCAAGGAGATAGGGCAATTTGGTATATGGAGAAAGGGAAAGGAGGTTGAGTGCAGGGAAGCAAGGAAATGGGGGAAGAGCTACACGTTTCCTTCTAATTACACTGTCATGATTTTGTTCACGTAGACATGCCCTTTGAGGGAATAAATAGAGATAACTAAACCTCATCTCAGGTCTGTTTCACTATCACTAGTCATATTACCAAATGACCGCCTGGTTTAACTAAAAACTACCAGCCTTCTAATGCTAAAGATGAAGTGTCCTTTTGACTTTTTGAGGGGTTGTTATAAAGTTATATTAGCCTATGACTAATTTAAGTACAAGTAGGAAAGGAGTAAGACACAATTTCCAGGTGTTGCTAAGATGTTATCTTACGTAAGTGATTCAGATTAAGTTTGAGGCATGTTAAATGTCTTCCCCCTAGCATTTTGGCCTTGGCAAAATTACGTATGCTTGTACAAGCCCTGTTTTCTTATTTACAG
Seq C2 exon
CAATACCAGAAGAAATGGATGTGACTGCTTTACATTAATTTCTACTGATCCCATCCAAACAGATAATATCAGAAGAAATGGATGTGACTGCTTTACATTAATTTCTACTGATCCCATCCAAACAGATGAACAACTTGATGTCTTCCTTTAAAAAAAAAATGACATGTGGCCTTCATAGCTTTTTTCCTTCCCCTTGATGTAAATCTCAAGTGTTTAAAAGGAGGAATGAGTCTAAATCATAGAAAATCTCTATTTAGATTGGGATAAGCTAATTAGCTATTATTTATTGATCCCTTGCTGTAAGTCAGAAACTATATTCGATGCTTTCAATGTATTAAATCTGATCCTTCTCTCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225111:ENST00000421964:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCAGATTTCATGGGCTT
R:
TCTGACTTACAGCAAGGGATCA
Band lengths:
346-1211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains