HsaINT1002681 @ hg38
Intron Retention
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr16:20427788-20429801:+
Coord C1 exon
chr16:20427788-20427867
Coord A exon
chr16:20427868-20429677
Coord C2 exon
chr16:20429678-20429801
Length
1810 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGTTTTCCTGTCTGAGAAAGGTA
3' ss Score
1.71
Exon sequences
Seq C1 exon
ACTCTCTCCAAATTCCCGATAACCACCCTCTGCTGTGTCCCAACCATCTTTCGGCTGCTTGTGCAGGAGGATCTGACCAG
Seq A exon
GTACAGCCCGTCTATTTCGTGCTTTGAGGGCCTAAGTATGTGAATATATAGCATGGGTATCCACACACACAACTACCCTCTCATTCCAACTCTCTTTCTTTCTCTGTCTCTCCCTCTATATATTTTTCTGCCTCTCTCTTTGTCTCTCTCTCACACACACATTTATACACGTACACATTGACAAGTCAACATACCTGTAAATCTCACAGATGCCCCTCAAGAACAAGCTTCTGGCCCCCCAAAATTTGCATCCAGATGGAACTAAATAGATTTAAGGCAGACTGAAATTTTAGCACCTGAGATAGGCTTCTCCTCACACCATACACCCATGGGCTATTCTGTCAGCAGTGTGTCTGCTACTTCTGTGAGGCGAGAGAAATGATTGGAAAATTGTTAGCCACCTGTGGAGTGGGGTCTGTGGCCAGGGCCCTCAGGTGTGGTGAAACTAACAAGCCCGCACCGCAGTAGATGCCCCAACTCTCAGCCTCAGACTAACCCCAGCCAACTGTTCTCTGAGCACATGCCATTGGGCACCCAAGAGAAAGGGACAAGGCACTGATGATGGCTCCATCCTGGGTGAAGCCAAAGCAACATCTTCTAGCAGAACAGGGCTGGTTGCTGGGGTATATGGAGAGAGGCCCACTGTCCTTCAGTATCCACCAACCCTGACCTGTTCTCCCTCTTTTGTCCTCCCGTAAGTCATGAGGAGTCGTCCTCTCATCTTTCCTAATCACATGAATCTACCCACCAAGTGTCCAAAAAAGGGAGTTCTTACATGCTTCTAAAAGTGAATTCTTCTCCAATGTAAGAAAATCATCCCATTCATTGATCTGATGTGTGCATCTCCACATGATGATTTTGGCTGAAAGCAAGCTCCAAGTACCTCGTTAAGAACAATGTCGTTGAATGCTCTTTGGTAATAATAAGTAACTTAATCAAGCCAATTTGATCTCCCCTCTCCTCCAAGATTAAAAATGTACTTGCAGTCACTGTTCTTTTTTATAATTTGGATGATTTGTTGAACAGAGAGGGCATTTTGCAACATAATTAATATCTGTAGGAATTTTTGGGATTCTTAGGGGTCTAATTTTTATCTTTTCCATTTTCTTTTCTTTCCTTTCTTTTCCTTTTTCTTTTATTTTTATTTATTTATTTATTTTAGAGACAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACATCTGCCTCCCAGGTTCCAGCTTTCCTCCCACTTCAACATTCCAAGTAGCTGGGACTACAGGCATGTGCCACCATACCCAGCTAATTTTTAGTATTTTTCGGTAGAGACGGGGTTTTACCACGTTGACCAGGCTGGTCTTCAACTCCTGAGATCAAGCAATCTGCCCACCTAGGCCTCCCAAAGTGCTGGGACTACAGGTGTGAGCCATGGTGCCTGGCCTATCTTTTCAATTTCTAATTCATCTATCCTTTTCAATCAGATTACTGTCCTAACCAATTTATTATCAGTTTTTTTCCAACTAAATTATTTTGGCCAAGTTACCTGGAACTCACCATATTATGCCAAAACCTATTATATGAGCTTCTGATTTTATCTCAAACTCAGATAGGATGGATCTTTTAAAAATTATCTGTCCATGAGGAGCATGGTTGCAAAGCCAGTGGGTGGACTCACTTAGAGAAGATTAAAAAGCAGGGGCATCTACCCTCTAGTGCCTGTGGTGTTTGCATCTGGGCAGTGGCACCAGAGGGCGGGGTGATATGAAGATCCTGACATAGGTGGCCTTGTTTTCCTGTCTGAGAAAG
Seq C2 exon
GTACCAGTTTCAGAGCCTGAGGCACTGTCTGACCGGAGGAGAGGCCCTCAACCCTGACGTGAGGGAGAAGTGGAAACACCAGACTGGTGTGGAGCTGTACGAAGGCTATGGCCAGTCTGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549:ENST00000331849:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(2.1=10.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAATTCCCGATAACCACCC
R:
CGTTTCAGACTGGCCATAGC
Band lengths:
198-2008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains