HsaINT1002779 @ hg38
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133429939-133432692:+
Coord C1 exon
chr9:133429939-133430101
Coord A exon
chr9:133430102-133432587
Coord C2 exon
chr9:133432588-133432692
Length
2486 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCACCTGTCCACCCTCCTAGGAT
3' ss Score
9.19
Exon sequences
Seq C1 exon
CGCAGGACGGGCGCGCTGCGTGTGGGACCCGCCGCGGCCTCAACCCGGGTCCGCGGGGCACCCGCCGGATGCGCAGCCTGGCCTCTACTACAGCGCCAACGAGCAGTGCCGCGTGGCCTTCGGCCCCAAGGCTGTCGCCTGCACCTTCGCCAGGGAGCACCTG
Seq A exon
GTGAGTCTGCCGGCGGTGGCCTGGGATTGGCTGTGAGGTCCCTCCGCATCACCCAGCTCACGTCCCCCAAAACGTGCATGGTGAGAACCTGCTGGGTGCCGTGCTAGGCTGAGGTACTAAGCCAGGGCGGCTTAGTTTAATGCTGTCTGTGCCCTCTAGAAATTATTTAAAATGTTTGAACAAAAGCTCCAACATTTTTGTTTGACTGGGCCCCACAAATTATGTAGCTAGTCCTGGGAGGGCCCCTGTGCCCAAGGACTCCTGGCTGAGTGAGGACACCAATCTTAAACAGTTACCAAGGACTTCCCCATCTATTGTGGCTGGAGTCAGACTGGAGGGCTTCCTGGAGGAAGTGGCCTCTAAACTGAACCCACAGCAGAAGTGGGGCTGGTAGGGGGAGGGGAGATGAAGGAGAGCAGGCACCCCAAAAGACAGACTTCCTCGCAGGATTGCATAGGACATTCATGGGCTCCAGGCACTTTTGCCTTGATGGGCCCCTTCCTCCACAAAAAAATTGAGAATTATGTTTTAATATTCTTATACAATGTATAAAGTTTTATGTGTTACTATAAATACAAGTCTTTTTTTTTCCTATTTTTTTTTTTTTTTGAGACAGAGTCTCCCTCTCTGCTCACTGCAGGCTCCGCCTGCCAGATTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCCTGGCCTCACAAAGTGCTGGGATTACAGGCATGAGCCACAGCGCCCCGCCAAGTCTTTTTTTTTAAATTCTTTTGAGACAGGGCCTCGTTCTGTTGCCCAGGGTGGAGTGCAGTAGCACAATCATAGCTCACTGTTGCCTCAACTTCTTGGGCACAAACGATCCTCCCACCTCGGCCTTGGAGTAGCTGGGACTACAGGCACATGCCACAATGCCCAGCTAATTTTTAAATTTTTTGTAGAGATGGGGTCTCCCTTTGTTACCCAGGCTTGTCTAGGACTCCTGGCTTCAAGCCATCCTCCCACCTTGGCGTCCCAAAGCACTGGGATTACAGACATGAGCCACCACCCACGCCTGATCAGCAAATCTATTAATATTATATATTACAACATTAATTTTGACCTGGAAGTTCATTTTTTCATTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTTACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCCCGGGCCTACGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCATGCCCAGCTAAGTTTTGTATTTTTTAGTAGAGACAGGGTTTCATCATGTTGGCCGGGCTGGTCTCGAATTCTGACCTCAGGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGATAAGCCACCACACCCAGCCTAGTTCATTTTTTTCTTCTGATTTTATTTTATTTATTTATTTATTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAATGCAGTGGCTCAATCTTGGCTCACTGCAAGCTCTGCCTTCAGGGTTCAAGCCATTCTCCTGCATCAGCCTCCCGAATAGCTGGGACTACAGGTGCCTGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGCTCTCCTGACCTCGTGATTTGCCCGCCTCGGCCTTCCAAATTGCTGGGATTACAGGCGTGAGCCACAGTGCCCGGCCTTTTTCCTTCTGATTTTAAAAGAAATTAGGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGCGGATCACCTGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAATGCCATCTGTGCTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTCGGAAGGCTGAGGTAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGAGGTGAGCCAAGATCGCGCCATTGCCCTCCAGCCTGGGCAACAAGAGCGAAACTGTCTCAAAAAAAAACAAGAAAGAAAAATAAATTAAAACATTTGCCTCTTGAGCTTCAAGTCAGTGACAAGTTAAGAAGGAAAAAAAGAAAAAAGACACAAAAAACACATTTCCATGGGCCCCCAAAAGTGTGACAGGACCTGGTCATGGTCCCGGTTCCCCATCGATGGGTCAGTCATGCCTTGTCCTCTGAGGGCACCAGTGCCCACGGTGCAGAGTGTTGGCTGTGTCAGTGTGTCCTGCAGTCTGGGAGGGACAGTTAAGGTTGGACACTGGCCTGGAAGGCCCTGGTGGCCCCTGAGCTCGCCACCCACCTGTCCACCCTCCTAG
Seq C2 exon
GATATGTGCCAGGCCCTCTCCTGCCACACAGACCCGCTGGACCAAAGCAGCTGCAGCCGCCTCCTCGTTCCTCTCCTGGATGGGACAGAATGTGGCGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323:ENST00000371929:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=20.0)
A:
NA
C2:
PF135821=Reprolysin_3=PD(3.3=11.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains