GgaINT1005479 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6911404-6912313:+
Coord C1 exon
chr17:6911404-6911554
Coord A exon
chr17:6911555-6912208
Coord C2 exon
chr17:6912209-6912313
Length
654 bp
Sequences
Splice sites
5' ss Seq
GTTGTAGGT
5' ss Score
2.38
3' ss Seq
CTTATTTCTCGTCACACCAGGAT
3' ss Score
7.24
Exon sequences
Seq C1 exon
CACAGGCCAAACAAACTGCTTAAATGACCTGCCGGACATGGACGGCAGCATCCCTGGATGGAAGCCTGGCTTGTACTATGGAGCAGATGAGCAATGTAAAATAGCCTTTGGGAGCGTTGCAACTGCGTGCACCTTTGCTGACAGCAATGTT
Seq A exon
GTAGGTAGAAAGTTTCTGTGTGTCTTGGGGGCAGCAGGGAAACGTTCTGGAGCTAGGATTCAGGAAAAGAGGGCTAGGGATGTTGTTATTATGGAGGGATTGAAGGTGCTTTTCCGCCACAGATTGTTTTGGCAAAGAGCAAACCTTAAAAGGTTTCTAAAATGCTTTTCTTCTCTCCATCGCTGCCTTTGTCTACATAAGACTCCTCTAAGGTTTACACAGTACCCAGAAACCTTCTGTCCACACTGGGTTTGGTAGTGCTAGTACTGACTATGCTACTCAGGTGAGGTTTGGGTCCTGTCCTGGGGAGCTCGTTTGGTGGATCTCTTCAGCTTCCCTGCAGTTGTGCAAGTCTACATGGCTGAGAAATGCAGCATGGTTAATAGCTGCCATCTGGACACATTTTGTTAATGAGGAAGTACTGATTTGCGTGAAACTTTAACTGCTTTAGCTGATCCTCTTCTAGCACTGCAGCTAGTATTGCTGGTTGTTTGAGCCCACAACTTTTCCCTAATAGCAGGAGAAATTAAGGAACCTGCTTGCATTTTTGGATAACTGTGGGGTAACCAAACATCTGGGACATGCACTGAGCAGCTTTTGGGACTGCAGTGTTGATGTGTTACCTCTTAACCTCCTTATTTCTCGTCACACCAG
Seq C2 exon
GATATATGTAAAGTTCTCTCATGCCATGTACAACCAGGAGACAAATCCAGCTGTACTCGGCTTCTTGTTCCCCTCTTAGATGGTACTGAGTGTGGCGTCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=21.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCCAAACAAACTGCTT
R:
TATTGACGCCACACTCAGTACC
Band lengths:
254-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]