RnoINT0013318 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5535795-5537235:+
Coord C1 exon
chr3:5535795-5535957
Coord A exon
chr3:5535958-5537130
Coord C2 exon
chr3:5537131-5537235
Length
1173 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCGTTTCCATCTCTCTTAGGAT
3' ss Score
9.83
Exon sequences
Seq C1 exon
CACAGGGCAAATGCACTGCCTCTGGGACCCGCCCGGGCTGCAGTCAGGACTCACATGGCACCAGCTGGTGGCACAGCCTGGCCTCTTCTACAGTGCAGATGACCAGTGCCGTGTGGCTTTCGGCGCCGGGGCTGTCGCCTGCACCTTCTCCAGGGAGGGTCTG
Seq A exon
GTGAGTCCGTCTGTCCATAACACCCAGTCTCACTCCACCCAGCTCACTTCTTCTTAGCACACTGATCTCCACCCGCGCCAGGCGTCAGGTACTGGTGAGGACCAGTCCCGGGCTCACTTGTTCCATGTTCACAGTTCGTCAGTTATGTGCCTGATCTTGTCTAAGGCCTGAGTTTACTTTATTGTTAGGTAAGAGCTGTGCGTGCGTGTGTGAGTGCCACAGTACACTTTCGGAGATGAGAAGACAACTCCATTGATTGGTGTCTTTCCTTTCCTCTTGGGTTCTGGGGGTTGCATCATCATCATTTTTACCCACTCCACCTACCCTCCTCTTGGACGTATTGGACTTTTGTAAGAACTAAAGTTCTCATACTTTTTGTTTGGCTTTGTCTTAAAGATGATGTCGTTGTTCCTAGTTCAAAGGCATTTAACCTGGGGGCATAGGCTCGGCATAAACAGCTTCTAAATTCAGAGGCCTCCGGGCTCCACACGGAGTAGCAATGTGGCTCACAATACTTGTAGATGCAGAGGCCAGAGTTTCCCAGAGCAGGCTTCCCCCTTTCCTCTTTGCCCAGACAAGTCCCTTTCTTCTTCCAGAGAAGCATTAAGAACTATGTTTAGGGGCCAGGCAGAAGCATTAAGAACTATGTTTAGGGCCGGGCATGTAGTTTAGTTGGTGGTAAAGTGTTTGCTTCACTGGCATAGTCAAAGCCCCAAATCTGGGCATGGTGGCACATATATGTAATCCCAGAATTCTAGAGGTGGAGGCAAGGGAAGGAGGCAGGGAGGAGGCAGAAGTCAAGGCCATTCTTGGCTGTGTAGGGAGTTCAAGGTCAGCCTGGGCTATATTTAAAAAGTTACATTTAGTAGTTTTGTAAGATAAATCTCTGAATTATCATGTTTATTGACCTATGTTGGAATGTGTGTCTTTTATTTAACAGTTTATCTTTCTCTCCTGATTTTAATCATTAAGACATTTTCATGATCCCTAGAAGCATGCCAGCCCTGGCAAGTTCCCGTCCTTGCTCCTAATGGACAAGTCAATCAGCTGTGTGGTTTGTTTTTTTTTTTTTTTTTTCTTTCCCAGGCCACTCATCTGAGCAGGGCATTGACTCATCAGGAAGGGACACTAAGCAGGCAGCCTCTTAGTGGGCCTCGTTTCCATCTCTCTTAG
Seq C2 exon
GATGTATGCCAGGCTCTGTCCTGTCACACAGACCCCCTGGACCAAAGCAGCTGCAGCCGCCTCCTTGTTCCTCTCCTGGACGGGACAGAATGTGGTGTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=20.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATGCACTGCCTCTGGG
R:
CTTCTCTACACCACATTCTGTCCC
Band lengths:
262-1435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]