DreINT0026252 @ danRer10
Intron Retention
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45260031-45263907:-
Coord C1 exon
chr8:45263757-45263907
Coord A exon
chr8:45260136-45263756
Coord C2 exon
chr8:45260031-45260135
Length
3621 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTTTTTTACTGGTGTCAAGACA
3' ss Score
1.29
Exon sequences
Seq C1 exon
AGCTGGTAAGGCAGAGTGTGTTCAGGATGTGCCAGTGTTGGGTGGTTCAGTGCAGGACTGGAGGCCTGGTCTTTTCTATGGAGTGGACGATCAGTGCCGTATAGCGTTTGGCAGCTCAGCAACTGCTTGCTCTTTCACTAATGAAGACATG
Seq A exon
GTGAGTGAGAATGACTATCAGTAGACATGTTTTTTTTCTGTGCAAATCATCAAAAACTCTCCTAAAATGTCCACATTTGATGTCTGATTGGTTTGCATTCAGCAGATTGTTGCCTGTTAAAAATGTGGAGATGTGATAGGAGAGAGACTGGTCTGTAATTTTCAACCAATGAGATGTTGAGTTTTGTTTTTTTGAGCAGAACGGTTACCCATGACCTGCTTAAAAATGGTTGGGAATGAATGTTACAGTGTGAAGTAAAATGTTGATGTGTGTTAGGGTCAGCACTATGGCCGTGGAATTGTCTTGCAGGATGTGTGACGGGATTGGGTCTAGAGGGCAGTTTGTGGGATTGGTAGAGTGGAAAGTTTAAATTCTTCTTCCTCATTAAGGAGGGAGATATAGAAGAGTGAATTTCTGAGGGTGTGATTTGGGTTGTATGTAGAGGAAAACAGACTTTATTTGAGTGTTTTTCTGGGAAAAAGGTGGCCCTGTGAAAAATCCTTACCTCATAAGGAGGTAGTGGGAGTAGGCAGGTGCATAAGTAGGGCTTAACCTGCACAGGTAGGGCACATGCCTTTTTTCCCTTGGAAAAAAATGCCCCTCGCGATCATCCAAATTCTCCTCCTCTCAAAACATCTCTGAGATGTCTCTCAGAACATCGGACAGCACAGGTGTCAAATTCAGTTCCTAGAGGGCCACAGCTCTGCACAGTTTAGTTTCAACTCTAATTAAACACACCTGATTAAACTAATTGAGTCATTCAAGCTTGTTTTCAATGTGTTGAAGCAAGGTTGGAACTAAACTGTGCAGTGCTGTGGCCCTCCAGGAACTGAGTTTGACAACCCCGGATTAGAGGGAAAAGAGAGCATTGGCCTGGTGGAGAAAGAACATATCTTATCTACACGGAATATTAAAGTGGAACAGAACGCTTCTGTTGCACTAATAACATCAAGAAGTGAGAACTGGGTGTGTGAAGGAAGAGAGGATGTGAGGAGGACTGGGAGGACAAGTTGTGTCTAAAAGAGATTGGTTGGGAGGGTGGCTGTGTGGTTTTGGGGAGCAGTCAAATGTAATGCTAAAACAGAGTGCAGTGCTATGAAGACTGCATCTTCTGTGCTCCTGTTGCCATGGTAGGCAAACTGATGTGGGTCCAGTGTGGATGGCAGAGAGTCTTTCAGATGTGCCAGGACCAACCGCTCAAAGCACTTCATGATGTTGGGCTAGAGTGTTTCGGCACTGGGAAAATAGAGGTGGTTTTAAAGCATGTAGGCACAGCTGCTAGGTTAAGCGATAGGTTAAAAATGTCTGTGAATACCCCAGCGAGCTGTTCTGCACATGCTTTGAGGATGCACCCAGGAATACTGTCTGGTCCAGCAGCCTTACGCACACTGATTCGACTCAGTGCGGTGTAGACTTGTGAGGAGGTGAATGTGATAACTGAGTGGTCGGTTGAGGATGTGATCCTGTTGTAGGGCAAGGGTTAGTAAATCGATTGAATGAATGTGCCATTCTAGCACAAGTTGTTAGTAAATCTGGTCCAAGTGTGATCCCAAGTTCCATCTGTGGTTTCCCTCATCTTCCAAAATCTGAGATAATTTTTGCATTCTCAGTTTGAAATGTTCATCTTTGGAAAAGCCTTCTGCTGATTCCATCTATCTGTAGGTGTTACTCATCATCACAAATTTTTTTGGTTAAGTCAAATTTTGTGGATGGCCCTATGGTGTTTCCTGGTGCCTTCACGTCTTCTTCCTTCATCACCACTGTAGGTTGGGCTCAGAACTAAACCATGCTCCTTCTCTCCATCCTTCCTGCTGTAGTTCACTATCATACTGGCTATCTTTTGCGTGGCTTGGGGGTCTCATCCATCACAGGGTCATCTGTGGTCTCTGTTACAGGCAACTCCTTTATGGGAGTCAACTCCCAATGGTTTCTCCTGACACTTTCTTTTCATTAGAAAGTGATCTCGTTTAGGTGTCTACAGCCACCTTCTTGGGGTTCTGTCTATACTTGTCATACTTGTTTTTCATTTCTGCTCATTAGATTGCCTTGTGCACATATATCCGTCAATTCTATTAGTCTTTCGCCTGGGGTTGTTAGTGCATAGCACTGTCACATTGACTTGTGTGTGGCATTCTGTTTTGTTTAAGTTATAGTTAAGCTGCAAATAGGTCTGCTGTGCTTAGAATGGCTAGTCGAAAAAAGATCACAATCTCGGTTCGACCTCCTAGACGATCTTAATCCAGCATTTCTACGATTCTGCCAATCATATTTTCAAGTTCAGGAGAGAAGCAAAGGAGGCTGCAAACCAGTCACATACTGTAATTATAAGGTATAACTCACCAAAAAATGTCATTTTTGTCTTCATTTAATGATGTATTCACGGCCAGGAAATCACATGTGACGTGAGCTGCTGACCGTGAGCTGTTACCACAGAGAGGGCGTGCATGCGCCCTACTTAATGATGTACACGCACATGTCTACTTTAATGATCAGAACCTGCATAGGCTTGTAAAAAACATTCAGTTTGTGACACAGAGCGATCGTTTGAGAGCCACGCGCGAAGTATGAACAGCACTTAGCAGTGAAAATGAAATCGAAAGCACGCACATCATTTAAATAATCATTTCGCATTTTAGAGTTATGATTGTCAAGCATTTGATATGTTTCTTCCTTCACAGTAAACAGAATTGTGCATGAAAATAAATGTTTACAGTGTCAGTTTACCTACTCTAGCCTATATATTGTTGAATATTATGTAAGAGGTAATCTGATAATGACAAAAACCAGTTTTACCAGTGAATAAAATGGTCTAATAATGTTGTCAATGACAGATTGCAAGCATATATCACAAACATAATAATTCAACATCAGAATTATTATAATTAGAATAGAATTATTTCTAGAAACCAGTAGACCTACACATACTAGTATGATTGTTGTTTGCGATATCCGCTTGTTAAGTGGTGACGTGTTTGTGACGTATGTAATACTGTTTACGGGTCCAAGCCGCCACTTATTTGAGTGGAGAAATCATTCGTTTATGATCACGTTTTATTCCTATCACACATTAAAGTTAATTTTATATAAAATCATAGTGTACACAACAATCTCTGGGGTTGCTGCATAACAAATACCAAAATTTTAACAATTTATAAAAAAATAATCGCTTTCAGGCCATCGGATATTAGGCATGGACATATATACTGCGACCGGGATTTTCGAAAGCCTTAAATCGCTTTGTAAACGTTTATTATTACCATTTTTATGAGTCTCCCCATTCAGTTGAATAGAGCGCTTGGACCCGGAAGCCGCTTCACGTGACGTCACACTTAACAAGCGGATAACAATAATAATAGCCCACTCATATTAACCTTTATTTTACATCTACAGAATCGTGAGAAATTCGTGATCTGTATTTTAAGCAAACAAATCGCAATTCTTATTTCAGTCAGAATCGTTCAGCTCTAGCTCTGCTTCACCTTGTCTTCTGCCTCAAAAACCATGTAATAGATATAACATAAGGCACAAAACTGATTAATTCTGATTTCTTTAGAATTTTCAGATTGATTTGACTATGAAAATTAAAAATGACTTTATTTTATTTTTTTTACTGGTGTCAAG
Seq C2 exon
ACAACTTGCCGTGTTCTGTCCTGCCATATTAACCCTCAGGATCATAGCTCATGCACTCGTCTTCTTGTGCCACTCCTGGATGGAACAGAGTGTGGGCCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270:ENSDART00000146364:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=21.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]