Special

HsaINT1003708 @ hg38

Intron Retention

Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:HGNC:29186]
Coordinates
chr10:27079089-27082833:-
Coord C1 exon
chr10:27082803-27082833
Coord A exon
chr10:27079162-27082802
Coord C2 exon
chr10:27079089-27079161
Length
3641 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
TCTATATTTTTGTTCTAAAGGCT
3' ss Score
6.5
Exon sequences
Seq C1 exon
TGGATGAAAGCTCTGAAGACTCCTTAAGCAG
Seq A exon
GTAGTATTTTACAGATTTTTAAAAATATATTTAAAGGAATACAGAGAAAAGAAACTGTTGAGTGCCCTACTCTGGGTAGACACCATATTATGTGCTTCTCCATATAGTCGTCCCAACAGCTTTGCAAAGTATCTGTGCTATATTACAACCCAACTGTGTGGTTCAGAGAGGTTGATTAATTGGCCCATGACCTCACAGTGAGCAAGCAGCTGACCCATGATTTGACCATCAGCCTGCTTGGCTCCCAAATCCCTTCTCTTGCCCCTCAGCATAGATTGATAGAGACCTGTGCGGTGCTGGATCAAGGTACAGGTCCAAATCAGATCAATTCAGAGACCTACATTTAGTTCTATGTTAACTCTCAGAGTTTTTCTTAGGAGCCTGGTTAGTCCAACAATTTGTCCTAATATGCTTGATAATTGCAGTGGTAATTAGTACTTTGACTTTATCATCAAAGGTTTTAGGCCAGATCTCACTTAGCTGTGGCCACAGGGCCATACATTTTACATAAGCAGACCACACAAGTCCTATAAAGGAATTATTTTACTGTAAGTGAAAACTATTTACCTATAGACCATATTGTGTTAATTATATTTAGCATCCAGTTAGAGGATATTTCTGGTTTATTTCTCTACCTACTGACTTCCCAGTTTGGTTTTCCCTTTAGGCTAGTACTCTAGCTCCATCTGAGTTGCTGGAAAGGATATGATTTTGTTTCTCTCTCTCCCTTTTTTTTTTTTTTTTTTTTTTTTTAAATAACTGCATAGGGCTGGGCGTGGTGGCTCACAACTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCATATCACAAAGTCAGGAGATCGAGACCAGCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAGAATTAGCCAGGCGTGGTGGCGCACGCCTATAGTCCCAGTACTCAGGAGGCTGAGAAAGGAGAATGGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGGGACTCTGTCTCAAAAAAAAAAAGCATAGTATTCCATGGAATATTTATACCACATTTTCTTTATCCAGCCAACTGTGTTCCTATTATTTTTTTCCATTTCTGCCAGCTAAGTATTCCTCATTTTCCTATCAACAGAATCAAAAGCACCTAGAATTTCAGGATTTTAAGGAATCAGACTAATCAGAATGCCATCTAGTACTTCAATCTGTGTTTAACATCTTGGTCAAATGGTTCAGATGGAGAACCTGAAACTCAAAGAGATTAAGGGGATTTATTTGGATATGATATTCAAACTAATTTCAGAGCCCAGTACTCTTCCTTCTTTATCATCCTACAGGTTAATATTTTAATAATAGAAAGGGTGAGTGGATCTAGTGAACCCAGCGGAAAAGGAAAGAATGGAATTAGCAGAGGAAGGCCAGGTTTGAAGAGAAACAGCACTGGGTTGGATAGGAACCGGGCTTTTGGAAAAGAGATCAGAATATTGGGGTTTTTGACAAGTTCGATAATGATAAATTACTGGAATGAAGGATACAGGATGTTTGGAATTATCTAGAAAGGCATATTAAAATAGGGGGTTCAGGGGAGTCCTGAACAGGTTGTTGCTTTTTTATATAATTGGAGGAACTGACAAACTCTCAAGGTTTCTACTGAAAAATGTTAAAATAATTTGAGCCACTGGGAAGAGTCTCTACAGCCAGTAGGAATGTACTATAACTACTTCTGCCTCAACTTATCGGTGGCTTTGAGCCCCTCAAGTACTTTGGAGCTGGAGGCTGCTGAACTACATAGATCTGTGGCCCAGGGCAGGTGTCCCCTCACCTCTGCCTCCTTTCCCAATTCTCTGATGTCCTTCTCATGGACATGTAGGGTAGGGCAGGGGTAGGATTAGCTGGCAAGTCAGTCATGGAGCAACCCAAATCATGGAGTTGGGTAGTTGTTAACATGCCTGTGCTGCTGGCAGATGACAGAGACTCCATTTAGCTTGTTTTCCAGGAGCAGAGATATAGAGAGCTTCTACTCTTGGGCATTTGAGACCATCCTTTCAGGAATTTGTGCCTTCATAGGCTGAAGACTTAAAGGTTGGAGATGCTATGGAGCCCTGCAGAAGAGGGATCTGTAAGTGGGAGCTTATAGGAAGGAAGGTGTTTAGATAGTACTTAGGGAAATATAGGTACAACTACCAGGACTCTTTCTCCAGCATTCTTTCTCTTTAGGTATCTGAGTGCCTGTAAAGATTTTTAAGGGCTTGCTAGTTTAAGGCAGGACCTCTATAGGGAAAATAATTGGATTTTATAACTTTTAATGTTTTAATATTTCTGGGGTGAGTAGTCCCAATAACAGCATATACGTATGTGTTTTGACTTTTGCCCATCTAGCTTTCAAACATTTCACACATTTCAGGGGACTCCTTATACTGTTTTAGGGTGAAGGGAAGCAATGAGGCCTTAAGTGGTTTTCATGTTGAAGAACCAAGACTGCCATTTTTGAGTGACACATATTAGTCTTTGAAATGGAGATAGATAGTGGAGAAAGGACAGTGTATCTTTCTACCTTGTTTTATGTATTTATTTATTTATTTATTTTATTTTATTTTATTTTATTTTTTTTGAGACAAAGTCTTGCACTGTTGCCCAGGCTGGAGTGCTACAGCATGATCTCAGCTCACTGCAATCTCTGCTTCCTGGGTTCACACAATTCTTCTGCCTCCACCTCCCAAGTAGCTGGGACCACAGGTACACACCACCACACCCAGCTAATTCTTTGTATTTTTAGTAGAGACAGAGTTTCACTATGTTGGTCAGACTGGCCTTGAACTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGAGATTACAGGGATGAGCCACCGTGCCCAGCCTATTTATTTATTTTTATTTTTTTGAGACAGTGTCTTGCTGTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAATCTCTGCCTCCCGGGTTCAAGCAATTCTCTTGCCCCAGCCTCCTTAGTAGCTGGGATTACAGGCACATGCCACCACGCCTGGTTAATTTTTGTATTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGATCTCGAACTCCTGGGCTCAAGTTATCTTCCTGCCTCCGCCTCCCAAAGTTCTGGGATTACAGGCACGAGCCACCGCATCTGATCTCCACCTTGTTTTAGATTATCAGGTTTGTGCTGGTTCAGGTAACGAAAGTTATATCAGCCATTAATTGGATTTTCAGTTCAGCCTTCGGGACAATTTGTGAAGACAAAGTATTCCCAGGTTCTGCCATTATCTTGGCTGTCACTATTAGTTATAGAACTAAGGTTGAGTCTTTATCGAATATTTTATAGTTTCGGAGAGGTAGAGGCAGCAATTGGTAACTAAAATATTTTTCAAAAACAAGATCAAATTTTAATTAGATCAAGAAACATCATTTAATATGCAGACAGTTGACCTTTCACCAGGTTTTTGTTTTTTTGGAGGGGGCATCCAGATTGAAAATTGTAAGCTGGTTTTTGTTTTGTTTTTAAAGAAATGAATTCACTCATTTTTCTATATTTTTGTTCTAAAG
Seq C2 exon
GCTTTCTGGCAAACCGGGTGTTGATGATTCATGGCCTACCTCAGATGACGAAGACCTCAATTTTGATACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890:ENST00000376087:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.869 A=NA C2=0.980
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF139001=GVQW=PD(7.7=12.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains