HsaINT1005392 @ hg38
Intron Retention
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:HGNC:1103]
Coordinates
chr6:32977442-32978005:+
Coord C1 exon
chr6:32977442-32977570
Coord A exon
chr6:32977571-32977756
Coord C2 exon
chr6:32977757-32978005
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GAGTTTGTGCCTCTTTGTAGGAT
3' ss Score
9.26
Exon sequences
Seq C1 exon
CGGAAGATGGAGAACCGTGATTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATGTTCTCCAACTGCTATAAGTACAATCCCCCAGATCACGATGTTGTGGCAATGGCACGAAAGCTACAG
Seq A exon
GTGAGTGGAAAGGTTGGAGTTTGAAAAATAAATGGTATGGGGAGTTATTTTGTCATGTGTGCTGCATAGCCTCAACGTGAGGGTCTCACTGTTCTGTACAGTTGTAAATTGGAGCTATATCACTTGGTGGCTGGGTATGTAGGGCACTGTTTATCAGCATAGTTTTGAGTTTGTGCCTCTTTGTAG
Seq C2 exon
GATGTATTTGAGTTCCGTTATGCCAAGATGCCAGATGAACCACTAGAACCAGGGCCTTTACCAGTCTCTACTGCCATGCCCCCTGGCTTGGCCAAATCGTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGAGGAAGATGAGGAGGACGAGGAGGAAGAAGAGAGTGAAAGCTCAGACTCAGAGGAAGAAAGGGCTCATCGCTTAGCAGAACTACAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256:ENST00000374825:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.890
Domain overlap (PFAM):
C1:
PF090735=BUD22=FE(13.0=100),PF0043920=Bromodomain=PD(44.9=93.0)
A:
NA
C2:
PF062137=CobT=FE(55.4=100),PF045468=Sigma70_ner=PU(70.0=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACCGGGATGCACAGGAGT
R:
CTCAGAGGAGCTCTCACTGCT
Band lengths:
257-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains