BtaINT0026722 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011074 | BRD2
Description
Bos taurus bromodomain containing 2 (BRD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045866]
Coordinates
chr23:7244887-7245451:+
Coord C1 exon
chr23:7244887-7245015
Coord A exon
chr23:7245016-7245199
Coord C2 exon
chr23:7245200-7245451
Length
184 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AGTCTGCTGTCTCTTTCTAGGAT
3' ss Score
11.74
Exon sequences
Seq C1 exon
CGGAAGATGGAGAATCGCGATTACCGGGACGCACAGGAGTTTGCTGCTGACGTGCGGCTTATGTTCTCCAACTGCTATAAGTATAATCCTCCAGACCATGATGTTGTGGCCATGGCGCGAAAGTTACAG
Seq A exon
GTGAGTGTCAAGGTCGGAGTTTGAAGAATAAATGAAGCTGGGGGAAGGAATTTTGCCATCTGTGCTGCATAGCCTGAACATGAGGTTCCCCAATCTATGCAGTTGTATGTTGGAGCTGCCAAATGGCTGGGTATGATCAGGGCATATCTACTAGCCTGGTTTTGAGTCTGCTGTCTCTTTCTAG
Seq C2 exon
GATGTATTTGAGTTCCGTTATGCCAAAATGCCAGATGAACCACTGGAACCAGGGCCTTTACCAGTCTCTACTGCCTTGCCCCCTGGCTTGGCCAAGTCATCTTCAGAGTCCTCCAGCGAGGAAAGTAGCAGTGAGAGTTCTTCTGAGGAAGAGGAGGAGGAAGATGAGGACGAGGAGGAGGAGGAAGAAGAAAGTGAGAGCTCTGACTCTGAGGAAGAAAGGGCTCATCGCTTGGCTGAACTACAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011074:ENSBTAT00000014704:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.893
Domain overlap (PFAM):
C1:
PF090735=BUD22=FE(13.0=100),PF0043920=Bromodomain=PD(44.9=93.0)
A:
NA
C2:
PF090735=BUD22=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTGCGGCTTATGTTCTC
R:
CGTCCTCATCTTCCTCCTCCT
Band lengths:
254-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]