GgaINT0123641 @ galGal3
Intron Retention
Gene
ENSGALG00000000156 | BRD2
Description
NA
Coordinates
chr16:73636-74119:-
Coord C1 exon
chr16:73963-74119
Coord A exon
chr16:73891-73962
Coord C2 exon
chr16:73636-73890
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CTCTGTGTCCTCTCTCTCAGGAT
3' ss Score
11.84
Exon sequences
Seq C1 exon
GTCTGCTCACCCCCTTCCCTTCCCACAGCGGAAGATGGAGAACCGGGACTACCATGACGCACAGGAGTTTGCCGCTGATGTCCGGTTAATGTTCTCCAACTGCTACAAATACAACCCTCCCGACCACGATGTGGTGGCCATGGCCCGCAAGCTGCAG
Seq A exon
GTGGGTGGGGTCACCCAGCAGCCCCGTAACCCCCAGCCCACTCAGCTTACCCCTCTGTGTCCTCTCTCTCAG
Seq C2 exon
GATGTCTTTGAGTTCAGCTACGCCAAGATGCCTGATGAGCCGCAGGACGCCAGCCCACCCTCAGTGTCTGCCCCACTGCTTGGAGCCCTCTCCAAATCCTCCTCCGAGGAATCCTCCAGCGATGAGGATGATGAAGATGAAGATGATGAGGATGATGATGAGGATGAGAGCAGTAGTGAGAGCTCATCAGAGAGCGAGGAGAGCTCTGACTCGGAAGAGGAACGTGCCAACCGCCTGGCAGAGCTGCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156:ENSGALT00000000212:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.953
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(96.2=94.3),PF031159=Astro_capsid=PU(14.7=47.2)
A:
NA
C2:
PF031159=Astro_capsid=FE(49.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATACAACCCTCCCGACCA
R:
TCCTCATCGCTGGAGGATTCC
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]