HsaINT0018485 @ hg19
Intron Retention
Gene
ENSG00000235307 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:1103]
Coordinates
chr6:32945219-32945782:+
Coord C1 exon
chr6:32945219-32945347
Coord A exon
chr6:32945348-32945533
Coord C2 exon
chr6:32945534-32945782
Length
186 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GAGTTTGTGCCTCTTTGTAGGAT
3' ss Score
9.26
Exon sequences
Seq C1 exon
CGGAAGATGGAGAACCGTGATTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATGTTCTCCAACTGCTATAAGTACAATCCCCCAGATCACGATGTTGTGGCAATGGCACGAAAGCTACAG
Seq A exon
GTGAGTGGAAAGGTTGGAGTTTGAAAAATAAATGGTATGGGGAGTTATTTTGTCATGTGTGCTGCATAGCCTCAACGTGAGGGTCTCACTGTTCTGTACAGTTGTAAATTGGAGCTATATCACTTGGTGGCTGGGTATGTAGGGCACTGTTTATCAGCATAGTTTTGAGTTTGTGCCTCTTTGTAG
Seq C2 exon
GATGTATTTGAGTTCCGTTATGCCAAGATGCCAGATGAACCACTAGAACCAGGGCCTTTACCAGTCTCTACTGCCATGCCCCCTGGCTTGGCCAAATCGTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGAGGAAGATGAGGAGGACGAGGAGGAAGAAGAGAGTGAAAGCTCAGACTCAGAGGAAGAAAGGGCTCATCGCTTAGCAGAACTACAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235307-BRD2:NM_001113182:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACCGGGATGCACAGGAGT
R:
CTCAGAGGAGCTCTCACTGCT
Band lengths:
257-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)