MmuINT0025658 @ mm10

Intron Retention

Gene

ENSMUSG00000024335 | Brd2

Description

bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]

Coordinates

chr17:34113932-34114478:-

Coord C1 exon

chr17:34114350-34114478

Coord A exon

chr17:34114178-34114349

Coord C2 exon

chr17:34113932-34114177

Length

172 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGC

5' ss Score

9.6

3' ss Seq

AGTCTCCCTGTCTTTTTTAGGAT

3' ss Score

12.01

Exon sequences

Seq C1 exon

CGGAAGATGGAGAACCGTGACTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATGTTCTCCAACTGCTATAAGTACAATCCTCCAGACCACGATGTTGTGGCTATGGCACGAAAGTTGCAG

Seq A exon

GTGAGCTTAAGAGCTGCAGTTGAATTTACTCCACAGTAACTGCCTATGGGGAGAGTTTAATTTTTGCTGTGCTTTAAACTTGTAAGACTTTGCCAATCTTTTATCAAGTTGGAGCTGGTATGCTGGGTGGCTGGGCATTAAACACAGTTTTGAGTCTCCCTGTCTTTTTTAG

Seq C2 exon

GATGTGTTTGAGTTTCGCTATGCCAAGATGCCAGATGAGCCACTGGAACCAGGACCTCTACCAGTCTCTACTGCCTTGCCTCCTGGGTTGACCAAATCCTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGTTCCTCTGAGGAAGAGGAGGAGGAGGAAGAAGATGAGGACGAGGAGGAGAGTGAAAGCTCAGACTCTGAGGAGGAAAGGGCTCATCGCCTAGCAGAGCTGCAGGAGCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000024335:ENSMUST00000025193:8

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.331 A=NA C2=0.900

Domain overlap (PFAM):

C1:

PF090735=BUD22=FE(13.1=100),PF0043920=Bromodomain=PD(44.9=93.0)

A:

NA

C2:

PF0043920=Bromodomain=PD(30.2=15.7),PF062846=Cytomega_UL84=FE(71.3=100),PF060886=TLP-20=FE(78.8=100),PF0105613=Myc_N=PU(82.0=98.8),PF045468=Sigma70_ner=PU(72.7=77.1)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000025193