HsaINT1006184 @ hg38
Intron Retention
Gene
ENSG00000151062 | CACNA2D4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr12:1878315-1879036:-
Coord C1 exon
chr12:1878956-1879036
Coord A exon
chr12:1878390-1878955
Coord C2 exon
chr12:1878315-1878389
Length
566 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCACCCTGGACTCTGGCAGCTT
3' ss Score
3.54
Exon sequences
Seq C1 exon
CGATCCCATGGCATTCTCCTGGGTGTGGTGGGCTCAGATGTGGCCCTGAGAGAGCTGATGAAGCTGGCGCCCCGGTACAAG
Seq A exon
GTGAGCCTGGGTCTGTTCCCTGTGGGGATCACAGGTTCCCCAGGAGCAAACTCCCTCCCCCGTGATGGGAGCCTCTCTCCAGGCAAGCCAAGCCCAGAGCTGGGGTGGGGCCCCTCCATCACTGCCCAAGAAGTGCAGGTGCTGAGCAGGGGAGCAGCAACTGGTGCCCCTGGGTCCCTTTCCCACCACGAACTATGACTTGCTCTGTGGCCTTCAGTAAGTCCTTTCCCTGCCCAGTGTCTCAGTTTCTCAGTCTGCTCCTCCGTGCCACACAGTCCTGCTGTAAGGGTGAGTGAGATTACATCATCAAAGCACCCAGAACATGTGGTGGTAAAGAAGTCAGGTAATAATATGTATGATGACGGTTGCTATAAACAGTCCGGTTTGGAAAGGACTCCTCAATCAATGATGGAAGCATGGCACTGGCTCAGTTACGTTCCTATTGAAAACACTCACTGCTGTGAGCTGCCATCTTTGACCGTCCTGTGGCCCCCAAACCCCTGCCCAACTCCAGATGCCCAGCACAAACAGCAGGCCTAATGCGCCTCCACCCTGGACTCTGGCAG
Seq C2 exon
CTTGGAGTGCACGGATACGCCTTTCTGAACACCAACAATGGCTACATCCTCTCCCATCCCGACCTCCGGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151062:ENST00000382722:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(27.7=100)
A:
NA
C2:
PF0274313=Cache_1=FE(25.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains