HsaINT1006318 @ hg38
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr2:31197249-31199532:-
Coord C1 exon
chr2:31199470-31199532
Coord A exon
chr2:31197335-31199469
Coord C2 exon
chr2:31197249-31197334
Length
2135 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTGCCTCTCATTTTATGCAGGTG
3' ss Score
10.42
Exon sequences
Seq C1 exon
GAGAAGATTCTGGAGAATGGGCTGGTGGAAGGCCATGCCTATACTCTCACAGGAATCAGGAAG
Seq A exon
GTGGGTTGAGGTTGGCCCTTCGGTTTCCCTCTCAGCCTTGCCCTTCCCTCTCTGGACCCTAGCTTATCTTGGTGGATTTAGTTTCTGTACCATCTGGAGAGTGGGTAAAGTCTTTGGTGGGTCCCTGTGCCTCGGCATCTATTTCCTGCGGTGAAGTGGTGGGTCCAGGCTTTGCCACCACCAATGCATCATCCCAACCTCATCCCCTGGGGCAGCCCTCAGCCAACCATCCTCCCACCCTGCTGTACCTCACAACCCTTCCTTGAACTTTGCTTCACTCTGGGCTGCCAAGAACAACCATTTCATCTGGTTCTTCCCTCCCAAATTTCTACTCCTCTCTGACACACTTCTTTATGACAGTCTCCATTGCTATCCATCTTTTGAGCTCTACTAGGCATTGAGAGGAAGACACACCAGGCAGGACCTGCCTACAAAGGGCTTACAGTCAGGTATGGTCACAAACCATATCTGAAAATGAGGAGGAAGCAAAGTTGAAACTGAGAGAAGAGAGTGTAGATGAAAGACTTTAGGAATTCATGGATAAGAGAAAAGACCTCCATCGAGTTGGGCTGGGGAGAAGTCAGAAGAGTCTCTTACAGAGGAGGTGATGTTGGGTTGGTCCTTGTAATGGATAGATTTGCACGGGGCGAGAAGGGCATTCTGGTGGAGGGAGCAGTGTAAGCAAAGCATGGAGATAAGAAGTCAGCAGGTTTAAGTTAAAGAACCTCTGATATTCTCTAGAGGGCCCAACTCTTCCCAAGTACTCCAGTTTCCTTTAACTCTGTTTCAAATTTCTTGGACTCAATTCACACTTAACTTCTTCCTTCTAGATCTCCAACAACTATGTTGGTCTGTGTGCCCAGAGCTTTTAATTTATTTCCATATTTATTAACAAAATTTATATAGCACTTACTGTGTGCTAAATGCTGTTTAACTGCCTTACAAACGTGGACTCATTTCATCCTCACAGCACTACTCTGAGTAGGTTGTGAACCCCAAATATCTGAGACAGGTCTCAGTTAATTTAGAAAGTTTATTTTGCCAATGTTGAGGATGTGCGCCTGTAACACAGTCTCAGGAGGTCCTGACTACATGTGCCCAAGGTGGTCAGAACAGCTTGGTTTTATACTTTTTAGGGAGACATGAGACATCAATCAACATATGTAAGATGAACATTTGATTCCGTCTGGAAAGGCAGGACAACTCGGAGCAGGGAGGGGGCTTCCAGGTCACAGGTAGATAAGAGACAAATGGTTGCATTCTTTCAAGTTTCTGTTAGTCTTTCCAAAGGAGGCAACCAGATATGCATCTATCTCAGTGAGCAGAGGGGTGGCTTTGAATAGAATGAGAGGCAGGTTTGCCCTAAGCAGTTCCCAACTTGACTTTTCCCTTTAGATTAGTGATTTTGGGGTCCCAAGATTTATTTTCCTTTCACAAGGTCTACTGGTTTCCTAGGGTTGCCACAAAAAATTACCATAAAATGTTGGGGGCAGGGGAGCTTGAAAACAACAGAAATTAATTTTCTCAGTTCCGAAGGCCTGAAGTCTGAAATCAAGGTGTGAGCAGGGACATGCTCCCTCTGAAGGCTCTGGGGAAGAATCCAATCCCTTCTTGCCTCCTCCACCTTCCAGTGGCTCCAGGTGTTCCTTGGCTTGGTCTACATAACTCCATTCTCTGCCTCCATCTTCACGTGGCCTTCTCTGTGTCCTCTCCCTTTCTCTTCTGACACTTGTCTTTGGATTTAGGGCCCACCCTGATCCATAATTATCTCAAACCCAGGTCCTTACTTTAATTACATTTGCAAAGATCCTTTTTCCAAATAGGGTCATGTTCACAGGTTCTAAGTGTACATATCCTCTTTGGGGAGGGAAGATCACCATTCAACCCACTATCATAGGTATGACTATTGACCTTATTTCACAGATCGGGAAATGGAGACACAGAGAGGTTAGCTGATTTGCCCTAGGTCTCACAGCTTGTAAGTACAAGAAGCAGAGCCACTTTCTCCTCTACCAGCTCTCTCTGGGGCTGTGATTTTCCACTGCAAGTGCTCAGCTCCAGGCCCGAGTCTCACTCAGATCTCTGGAATGTTTGCACTCAGCCCAGTCACCTAAACTGCCTCTCATTTTATGCAG
Seq C2 exon
GTGACCTGCAAACATAGACCTGAATATCTCGTCAAGCTACGGAACCCCTGGGGAAAGGTGGAATGGAAAGGAGACTGGAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711:ENST00000398824:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(6.8=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains