HsaINT1006880 @ hg38
Intron Retention
Gene
ENSG00000117335 | CD46
Description
CD46 molecule [Source:HGNC Symbol;Acc:HGNC:6953]
Coordinates
chr1:207767779-207770362:+
Coord C1 exon
chr1:207767779-207767823
Coord A exon
chr1:207767824-207770320
Coord C2 exon
chr1:207770321-207770362
Length
2497 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTAG
5' ss Score
3.14
3' ss Seq
AATCAAACTTATTTTTCTAGGTC
3' ss Score
7.93
Exon sequences
Seq C1 exon
TGTCGACTTCTTCCACTACAAAATCTCCAGCGTCCAGTGCCTCAG
Seq A exon
GTTTAGTAATTTCCTGCTTATAGTTTTTCAAAAATCCTTTAAATTCCTGGTGATTTTTTATAAAATCCTTCAAATTTCTGGTGATGTTCACTTATTTTTAGTAATGAAAGGAGGGAGGACATTTGTATAGCCATTTTAGTTGTTATACATAGTGATTCTAAAATTATTTGCCATAATCTGATATAAACAGGAATATGACCTTGGGAAAGTTGTATAAATTTTGAATGTGTTTATATATATATGTTTACATTATATATAGAGAAATTGATTTAGTACCTTCCTTATTGGGTATTAGTAAGGTATAAGTGGGATGCATTTAAAGCACTTAGCACAGTGCCTGGTGTAGAGAAAGCTCTTAGAGCTAGCCAATATGACTTATCCTACACTTAAATTAATGTTAGGGAAGGGGAAGGTTCATGTATGTTTGTTAGTATGTGTGTGTGTTAATATGTTAATATGTTTGTTTGTTAATATGTATGTTTTGTGTCATCAACTTTGCTATTTTATTCTTTTCAGAAGTGATCTGTTGACACCTTTACTGAGTTTGTTCCTATTGCAGGACTCTTTCATTTCCTGGAATGCAACTAGTTTGAGTCTTCTGATGTAAAACATTTAAACAGGGAAATTTCTGCTGTCCTCAGAACAAGATCTGTATTTCTGCCTCTTCCCTACCCACCCCTCTTCCACACCTCATAATGTTATTTATTTTTTTTCTCTTTAGTGGGCAGTTTTATCTGGCAATAGCAACTCAATTTTATAGCAACTGAAAGGCAGGAAAAGTCCTTATTTACTGAAATAAAATAGAAGACTTTTGCAGGGACTCCTGGTCAACCACTGTGCTTATGACTGGAGAGATTATTTTGATATGATGGAAGGAATTATCCTGATTTCAGCACTACCATCTCTGGTTTCACTTTGCTTCCAGCAGAAGCAAGAGACAATAGTAATTGTGGGTAGCACTTCAGTCTGGGCAGACTGTGCTTAGTTAACATCATTTCTGTGGTCTTCAGTTTCCCTTTAGTATAATGTGAGTGTTGAACTGAAATCTCAATCACTGGCTTCTAATTTGGTTATATATTTCCTATCTCCCTAATATTTTAAAGGATCGAAGAGAATTATGCATGTTAACATAGTAATTAAGATACCTTCTTATAGGCTGGGTGGGGTAGCTCACACCTGTAATACCAGAACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGAAGTTCAAGACCAGCCTGGCTAAGTTGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCGGGGTGCGGTGGCAGGCACTTGTAATCCCAGCTGCTCGGGAGGCCGAGGCAGGAGAATCGCTTGAACCCAGTGGGCAGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAAACAAAAACCTTCTTATAATTCCTGTAAGAGCTTGGTAACTGGTAGCCTCCTGAGTTGAGTGCTGTAGGGTTTGAGGGGCAGGAAGAGATGAGTTTTTTAGTGGACTGATACATGAGCAAAACAAGATTGCATGTGAAATTTATACTCAGTGAGGCATCCGGGCTTAACTCACATGCTCCTAGTGGGTATATGCACTAATACTACGTTTGTTGATACAGTCTTTTGAAAGAGTTGATGATAAGCATTTCATAAAGTATTTATAAAACACTGGTATAGCTTAGTGTTGGAGAGCAGAAGAGAGAATTGCTTGGGATTGTCAATGATTTCTTATCATCTGCTAGAGGAAGACTAAATAACAACATCATGATGTTAAGGTAGATCTAAATGTGTTAACAAGAAGAAAAGTTGAGGAAGTCCTAAGTGGAAAAGAGAAAGATGTAAATTATGTAGTATCATACTACTTACAGTTTTTAAAAAGATACATATGTTTACCCCAAGCACATTCCCTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCACCCAGGATGGCGTGCAGTGGCGCGGTCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGGTTCTCCTGCCACCTCAGACTCCCAAGTAGCTGGTATTACAGGCACCCACCACTATGCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGATGGCCTGGCTAGTCTCGAACTCCTGACCTCAAGTGATTCACCTGCCTCGGCCTCCCACAGTGCTGGGATTACAGGCGTGAGCCACCACACCCATCCTCACATTACTTTCATGATGGTTATCTTCTAAGATTTCCATTATAAAATACAGAGTGTGGTGAGCATTCTTGTACATACATCTTACATACTTGTGCAAATATATATGTAGGTTAAATTCTAAGATGTGGAATTGCAAAGTTTGTAAAGTGTGTAGTTTTCATTTGATAAACTTAAAAAATCAATATCAAAATTAAAGTCATAATTTTATATTGATAAGGCCCTGGTGAATTTATAAAATCAAACTTATTTTTCTAG
Seq C2 exon
GTCCTAGGCCTACTTACAAGCCTCCAGTCTCAAATTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117335:ENST00000358170:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.579
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains