MmuINT0032384 @ mm9
Intron Retention
Gene
ENSMUSG00000016493 | Cd46
Description
CD46 antigen, complement regulatory protein [Source:MGI Symbol;Acc:MGI:1203290]
Coordinates
chr1:196901704-196904030:-
Coord C1 exon
chr1:196903848-196904030
Coord A exon
chr1:196901752-196903847
Coord C2 exon
chr1:196901704-196901751
Length
2096 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
GACTCCATTTATTTTTCTAGGTC
3' ss Score
9.23
Exon sequences
Seq C1 exon
TGGTAAAATGTCCAAATCCAGTACTACAAAATGGAAGACTGATATCAGGAGCTGGCGAAATATTTTCCTATCAATCAACAGTGATGTTTGAGTGTTTGCAAGGATTTTACATGGAAGGCAGTAGCATGGTGATCTGTAGTGCTAATAACTCTTGGGAGCCATCTATCCCAAAATGTCTTAAAG
Seq A exon
GTACAAAGGTTGTCTTATTTCCCTTTATTTTCTTGGTGCTTTTTTCCTTGCTTGTTTTTAAATTTATTTCTTTGATGTTAAATATTATGATACCTGAAAAACAATAATTTAGTACTTACCTCAGGCCTGTGCCATTTATATGATATGAAATTCTGCTATTATGTTTGGTTTTGGTTTTTGTTCTAAGGACTTTAGTTTGTTAGATAGAGCATAGCAGTATGTAAGTTCTCTTAAGAATATTTCTGGAGCTGGAGAGATGGCTTAGTGATTAAGAGCACCGACTGCTCTTCTGAAGGTCCTGAATTCAAATCCTAGCAACCACATGGTGACTCACAACCATCCATAATGAGATCTGACGTCCTCTTCTGGTGCATCTGAAGATAGCTACAGTGTACTTAGATATAATAATAAATAAATCTTAAAAAAGAATGTTTCTGTATAGTAAGAGGATGCAGCAAGCTTTCAGAGTAAATTGAAGCATTTTCATTGCTATATAATTATCAATAATGAAAGTCATGTGCTCACGATAGGGTAAGGTTGATCTAAATTATATTGTTTTGGTTTCCAATGTGGTCTACCTCAGTATAAAACCTTCAACTTTGAGTATTCAGGTTTAGTACAATTTTGCTTACATTTTCTTAAAACATCTTTTAAATTCTTAGTGAAAGTTCTTGTGGTAACTCTTGCATTTGACCCAAACCATATTGTTATTTTTTTTTCCTAGTGGTAACTTCTCCCAGTACAAATTCTCCAATTATACCTCCTATTTAATAATTTCATGCTTATACTTAAAAATTCTTAAATTCCTGGTGATTTTTTAAAGATACCCTCTAAATTCTCACAGTGTCTACTTATTCATCATTTGGTCCATTTAATAGCACAGAAAGACTGAATATATTTGCAGCCATTACATTTGTCAGATTCAGTAACTCTATTTTATTTGCTAACCCCACACATGAAGAGGAATGTGAACTTAGAAAAGTTATACCGATTTAAAATCTGTATTCCAATGTGTAAAATAATCTAGTACCTTTCTTATTGCATTGTCAGTCACTTTTTATTGACCACAAGGGAAAGATGTGCATTAGAAAGCAGCAGTAGCAGCCTGTACCAGTGGTTTACGGTAGGTCTGATGGTGTGTGAAAAGTGGAGAGATTATGATGCTGTTTGTATGGTATCTGACTTGTTAGGATGCATGTTTACCTTAAATACATTCTTTTTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTTCCTTATACCCTCCCCCTGCTCCCCTACCCACTCACTCCCACTTCCTGGCCCAGGCGTTCTCCTGTACTGGGGGGATATAAAGTTTGCTAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCATCTGCTACATATGCAGCCAGAGACATGAGCTCTGGGGGGTACTGATTAGATCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTTTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGCATCCACTTCTGTAAAGCCTCACAGGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCTTATGCAATAGTGTATAGGTTTGGCGGCTGATTATGGGATGGACCCCCGGGTGGGGCAGTCTCTGGATGGTCCATCCTTTTGTCTTAGCTCCAAACTTTGTCACTGCAACTCCTTCCATGGGTATTTTATTCCCTATTCTAGGGAGGAATGAAGTATCCATGCGTTGGTCTTCCTTCTTGATTTTCTTGTGTTTTGGAAATTGGAATATATTCTTTTTATAATTTATTTTTAGTTACTTTATAGGATTTGTATTTGTAAAATACAGATACAATAAACATTCTTGTACTCTTGTCTGTGAAATTATATATGTAAATCAAACATTCATAAGCAAAATCTCTAGAAGTATAATTATAAAGAACAGGAAGTATGTTTATTTTTACTTTTTGAAAATTTTAATATTAGAATTAAGTCCATAATTTTGTTTTAATATGTCAAATGAATTGATAGACTCCATTTATTTTTCTAG
Seq C2 exon
GTCCTAGGCCTACTCATCCTACCAAGCCTCCAGTTTATAATTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016493-Cd46:NM_010778:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: