HsaINT1006893 @ hg38
Intron Retention
Gene
ENSG00000110848 | CD69
Description
CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]
Coordinates
chr12:9752486-9754690:-
Coord C1 exon
chr12:9754587-9754690
Coord A exon
chr12:9753590-9754586
Coord C2 exon
chr12:9752486-9753589
Length
997 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GTTTTTTTATTGTTTGACAGGTT
3' ss Score
10.34
Exon sequences
Seq C1 exon
AACTTTCTAAAACGATACGCAGGTAGAGAGGAACACTGGGTTGGACTGAAAAAGGAACCTGGTCACCCATGGAAGTGGTCAAATGGCAAAGAATTTAACAACTG
Seq A exon
GTAAGTCTCCAGAAGTCTCTTTATATTCCCCAGGGTGGCATCTCAGGAAAATCACTTTCCTTTTCTCCTTTCAAAGCACTTTAAATATAAAGGCTGAGCTCTTCAAGAGCTCTAACAATCTCTTCTGAATGCGTATACTCTGGAATTCTTTAATAACAGGCTTTATTATTATTCTTTTTCTTTATCCACACTTATAATACATAAAATAAATGCTTATAGTAATTTTTCTCAGCAAACTCTAATGTGAGTAGTAGATCTGGTTAATTTGGAAATATTTCAATAATAATTATGATGATGCAACAAAAACCCATTTTCAATGTCACATTTAGTCTTTACTAATAAGACAGTTGCTGGAAAATAAATCCTTCTTACTATTTCTCAGTTTTCATCTCCACAGAATAAAGAATAGTTTCAATGCCTAATTATGAGTTTCTATACACCTGAAAGAAAATTTGCCCCAGAATTAGATACTCTATTTTCATTACCTTTAGTTAAAATACATTTAATGTTTGAAGATCATTTTATAAGTTTGCTGTTGATCATAATACTGATAAAGTATCGAGATTAAAATTCAGGTTTCTAGAAAAGGGATTCCTAATATTTGTCCTATGGCTCCATATCCACAGATGGGCTTCAGGAGCCATAAACCCCTTAAAGCTGTATGCACTAGTATGCATGGCTGTTGAATGCATACAATTTTGTGAAATTATTTATTGAAAAATCTATGAACTCAGAAATGACCAAGAATCACTTATCTGGTGCCATGCCAACCAAATGAATGGCGTGCTTTCCTCTTACTTCCATATTTTTTCTCCACATCCTATTTTTTTTTCAATTCTTGTCCATTGTCTCTACAGATTAGTCTATGATTATTTGACTTGTGTATCCCACTAAGAATTTAAAAGAAGCAGAGGTCACCATCTCCGAGTTCATTCTCATGTAACTGAATGAAAACAATGAGCTGAAAATAATTCTAAGTTTTTTTATTGTTTGACAG
Seq C2 exon
GTTCAACGTTACAGGGTCTGACAAGTGTGTTTTTCTGAAAAACACAGAGGTCAGCAGCATGGAATGTGAGAAGAATTTATACTGGATATGTAACAAACCTTACAAATAATAAGGAAACATGTTCACTTATTGACTATTATAGAATGGAACTCAAGGAAATCTGTGTCAGTGGATGCTGCTCTGTGGTCCGAAGTCTTCCATAGAGACTTTGTGAAAAAAAATTTTATAGTGTCTTGGGAATTTTCTTCCAAACAGAACTATGGAAAAAAAGGAAGAAATTCCAGGAAAATCTGCACTGTGGGCTTTTATTGCCATGAGCTAGAAGCATCACAGGTTGACCAATAACCATGCCCAAGAATGAGAAGAATGACTATGCAACCTTTGGATGCACTTTATATTATTTTGAATCCAGAAATAATGAAATAACTAGGCGTGGACTTACTATTTATTGCTGAATGACTACCAACAGTGAGAGCCCTTCATGCATTTGCACTATTGGAAGGAGTTAGATGTTGGTACTAGATACTGAATGTAAACAAAGGAATTATGGCTGGTAACATAGGTTTTTAGTCTAATTGAATCCCTTAAACTCAGGGAGCATTTATAAATGGACAAATGCTTATGAAACTAAGATTTGTAATATTTCTCTCTTTTTAGAGAAATTTGCCAATTTACTTTGTTATTTTTCCCCAAAAAGAATGGGATGATCATGTATTTATTTTTTTACTTCCTCAGCTGTAGACAGGTCCTTTTCGATGGTACATATTTCTTTGCCTTTATAATCTTTTATACAGTGTCTTACAGAGAAAAGACATAAGCAAAGACTATGAGGAATATTTGCAAGACATAGAATAGTGTTGGAAAATGTGCAATATGTGATGTGGCAAATCTCTATTAGGAAATATTCTGTAATCTTCAGACCTAGAATAATACTAGTCTTATAATAGGTTTGTGACTTTCCTAAATCAATTCTATTACGTGCAATACTTCAATACTTCATTTAAAATATTTTTATGTGCAATAAAATGTATTTGTTTGTATTTTGTGTTCAGTACAATTATAAGCTGTTTTTATATATGTGAAATAAAAGTAGAATAAACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110848:ENST00000228434:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.8=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.7=86.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGTCACCCATGGAAGT
R:
GCCCACAGTGCAGATTTTCCT
Band lengths:
352-1349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains