RnoINT0032286 @ rn6
Intron Retention
Gene
ENSRNOG00000056783 | Cd69
Description
Cd69 molecule [Source:RGD Symbol;Acc:61318]
Coordinates
chr4:163041141-163043522:-
Coord C1 exon
chr4:163043419-163043522
Coord A exon
chr4:163042196-163043418
Coord C2 exon
chr4:163041141-163042195
Length
1223 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AGTGTCTCTTGGTTTGACAGGTT
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCGTTTCTGAAGCGATATGCTGGTGGACTGAAACACTGGATTGGGCTGAGAAACGAAGCTAGTCAGACATGGAAATGGGCAAATGGCAAAGAATTTAACAGCTG
Seq A exon
GTAAGTCGCCAGAAATCTCTATTCTCTCTAGGCTGACACATTTTTTTTTAAAAAAAATTAAATTCCTTTTCTTCTTTCTTTTTTTTTTAAACATTTCTTCCCTTTTCTTCTAAGTTCCATTGTTCACAGTGGTTCATTCTTCTTCACACAGCTCTTACCACTGCTTTTGTGTATATTACGCCCCTTGGAATTATTGAGAGGCATTCTTCATTATTAAAATTTACTCCATAACTCCTTCCAATCCCTTAGATTTGTCCTGGCGAGCACTAATGTGAGCAGTAGTCTTAGTTGGTTTGACATGGTCCCAGGACATGTCTCAGATGGCGGTGAAGTAGTTGCTGGAAAAGAAATGTCTGTTTCACGTCCCTCTCCCAGTTTTCACCCCTATGGGGACAAAGGACAATATCATAGCACCTAATTATGTGTGTTTATGAATCAATTGAAAATTCACCCCCCCCCAGCAATAAAGACACTGTCACTACCTATGATTAAGTCAGACAACGTTTTAAGGAGCATTCTGTAAATTTAGTGTGGATCTTTAACATATGAAAACTCAGAGCTGAATATATTTCTCACTCTCATAGCATTTGTATAATGACTGATATGATATCAGTATTAAGTATTTCTAATATAAAAGTCTATATTTCTAAATTAGTCACTGTGGTACCTGTTTTGAGTCTTGGAACCCAGGAGGCAGATGCAGGTGAATTTCTGCAAACTCAAGGCTAGCCTAGTCTAATAGTGAAGCCCTCCTTCAAAAACAAACAAATTGTATCTCTGGTAAAGGGACTCTTAGCGTGTGTCCCATGGTTGTATACCTGTGGATAGGCTACAAAGTAATACAAGAAAACCACCAGTGGTCTAAATAAAATATCAGTATTTGAGGAAATTAGTTATGACCATGCCCTAAGCCCCTTAAACTGTGCTTCTTGAAAGATCTGTGTGTGGGGGGGAATATGATATTGAACTCTGTTGGGAAATCCACTAAAATGAGAAAAACAGAGCCTTTAACTCTGCCTACTTTCTCTATTGGTGATTCCCTTCCAATGTTGTCTGATGTCTCTACACGTCAAACTGTGGCTACTTGGCTGGAAGTCTTGTGCTTTGCGCTTCCTACTCAGGGAACAAACAGAAATGATAGAGATCACCCCAAAGTTTATTCTCACATAACTGGCTGGAAACGATGAACTGGAAGTAAATCTGAGTGTCTCTTGGTTTGACAG
Seq C2 exon
GTTCAACGTGACAGGGTCTAAAAAGTGCGTGTCTCTGAACCACACAGATGTTGCTTCTGTAGACTGCGAGGCAAACTTACACTGGATCTGCAGCAAGGCCTCCCTATGAGGAGGAAGCATAGAGGTATAGGTGACTGTGCCATAGCACCTCAGGAAAGTTGTGTGACTGGATGCTACTCTGTGATTGAGTTTTCCACAAAGACCACACAAACCAACTTTACATCATCCTGGAACTCTTCCAGATAGATAGGACTATGGAACACAAGGAAGAAGACCCAGGAAGGTCCCTTGACCAGGAACTAAAAATGTCACTGACTGACTGGAAATCACATCAAAGATGAGAAGATGGCTATGAAGCCTCATAAATGCACTTTATATTTTAAACCTAGGATGAATACAAATGACTAGTTTTAAAGTCACTATTTATTGCTAAATGACTGCAAAAGCCAGCGCCTTCATGCATTTGCACTATTTGAAGGGGATTCCGTGGTGGTAAAAGATGAATGTAGATACAGGAAATTATTGATGACTGACTAATGATTTTCTTAAACTCCTAAAGCATTCACAAGTAGACCAATGCTTATGAAAACAAGCTTTGCAGTAGCTCCATCTATTAACAGACCTTTGCCTCATTATTTTGTCAATTGTTTCCCCCCAAAGAATAAGGGTGACCTTTTCTTTAACTGCCTCAGAGTAGACAGTTAATTTTCATTGGTACATATTTCTTAGTATCTAAAAATCTCTGTAGTGTGTTTCAAGGAAGAAAAAAAAGCCCAGCACATGAGGAATATTTGTAGAGCAGATTTCAAAGTGTTACAAAGAAAAGTGCAATATGTGTCGTGGCAGATCTCTGTCAGGACATACACCTTGTGGTTGGACCCTGGAATAACTCCCATCTTGTCCCATAACCTGTTTGTGTCTTTTGCAGTCCTTTATCCAAAGTATTTCCCATGTGCAATAAAGTGTTTATGTATGTGATTGTATTTTAAAACCTACCATAAGTTTAAGCTGTTTCTATGTATGTGAAAATAAAAGAACAGACAAACGGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056783:ENSRNOT00000091644:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.8=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.7=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATTGGGCTGAGAAACG
R:
ACCTTCCTGGGTCTTCTTCCT
Band lengths:
355-1578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]