MmuINT0032469 @ mm9
Intron Retention
Gene
ENSMUSG00000030156 | Cd69
Description
CD69 antigen [Source:MGI Symbol;Acc:MGI:88343]
Coordinates
chr6:129217343-129219697:-
Coord C1 exon
chr6:129219594-129219697
Coord A exon
chr6:129218388-129219593
Coord C2 exon
chr6:129217343-129218387
Length
1206 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GTGTCTCTATGGCTTGACAGGTT
3' ss Score
8.96
Exon sequences
Seq C1 exon
ACGTTTCTGAAGCGATATTCTGGTGAACTGGAACATTGGATTGGGCTGAAAAATGAAGCTAATCAGACATGGAAATGGGCAAATGGCAAAGAATTTAACAGCTG
Seq A exon
GTAAGTTGCAAGAAAACTCACTGTCCTCTCTAGGCTGACACTTTTTTTTTAAGACATAGATTCCTTTTCTTCTTTCTTCTTCTTCTTCTTCTTTTTTTTTTTAACATTTCCTTCCTTCTCTTCTTTCTAAGTTCCATTGTTCATGGTGGTTCAGTTCTTCCTCACACAGCTCCCATCACTGCTTTTATGCGTATTATGCTCTTTGGAATTATTGAGAGTCATCCTTTACTGTTAGTAACTCCGTCGCATCACTTAACTTTGTCTTAGCAAAACACTAGTGTGAGCAGTAGTAGCCTTAGTGAGTTTGACACAGACTCAGGACACTTCTCGTGAAGGGCGGTGAAGTAGTTGCTGGGAAAGAATTCCCTGCTTCAATTCCATTTCCCAGTTTTCATCCCTATAGGGACAAAGGGCAATAGTTTAGTGCCTAATAATAAGTATCTGAATCTATGGAAAATTCACACATACCCCCAGCAATAAAGACACTGTCACTACCTATTACTAAGTCAGACTTCACGTTTTGAGGAACATTCTATAAGTTTAGTGTTGATCTTTACACTATGTAAACTCTGAGTTGAATAAATTTCTCACTCTCTTAACATTTCTATAATGTCTGATACAATTATCAGTATTAAAAATCTATATTTCTGAATTAGTCACAGAGTTACATGCTTTTAGTTTCAGCACCCAAAAGGCAGAGGGAGGTGAATTTCTGCAAACCCAAGACTAACCTAGTCTAATAGTGAAACCCTCTTTCAAAAACAAACAAATTGCATTTCTGGTAAAGGGACTTTTGGCATGTGGCCCAATGGCTAGGCTACCAAGGAATACAAGAAAACCACTGATGGTCTAAATAAAATATCAGTATTTGGTGAAATTACCTATGATCATTCCCTAAGCCCCTAAACTGTGCTTTTTGAAGGATCTATGGGGGAAATATGATAATGAATTTTGCTGGAATGCCCATTAAAATCAGAAAAATAGAGCCTTTAGCTTTGCCTACTTTCTCTACCAATAATCCCCTCCCAGTGTTTTCTGTTGCCTCTACACATTAAACCACGGCTACTTGGCTGGATGTCTTGTGTTTTGTGCTTCCTACTCAGGGAGCAAACAGAAAAGGCAGAGGCCCCTGCAAAGTTGACTGTCGTGTAACTGGCTAGAAATGATGGGCTGGAAATAAATCTGAGTGTCTCTATGGCTTGACAG
Seq C2 exon
GTTCAACTTGACGGGGTCTGGGAGGTGCGTGTCCGTGAACCACAAAAATGTTACCGCTGTGGACTGTGAGGCAAACTTCCACTGGGTCTGCAGCAAGCCCTCCAGATGACGAGGATACATAGATGTATAAATGACTGTGCCATAGCACCACAGGAAAGTTGTGTAACTGGATACTGCTCTGCAGTTGAATTTTCCACAAAGACTGCACAAACCAACTTTACATCATCCTGGATCAACTCCAGATAGAACTGTGGGACATGAGGAAGAAGATCCAGGAAGATCCCTTGACCAGGAGCTGAAACTGTCACCAACTGACTGCTAATCACATCAAGGATGAGAGGATGGCTATGAAGCCTCATCAACGCACTTTATTTTTTTTTAAACCTAGAATGAATAGAACTGACTAGCTCTAGAGTTACTATTTATTGCCGAATGACTGCTACAGCCAGTGCCTTTACGCATTTGCACTATTTGGAGGGGTTTCAGTGGTAGGAAGAGCTGAATGTAGGTACAGGAAGATTTGACTGATTAATGATTTTCTTAAATTCAAAAAGCATTCACAAATAGAACAATGCTTATGAAACCAAGCTTTGCAGTAACTCCATCTATTTACAGAAACTTTGCCTCATTATTTTGTCAATTGTTCTCCCCCAAAGAATAAGAGTGGCCTTTTCTTTAACTTCCTCCGTGTAGACAGCTAATTTTCAATGGTACATATTTCTTAACCTTTAAAAACCTCTGTAGCGTATTTCAAGGAAGAAAACAAAAGCACAGCATATGAGTAATATTTGTAGAGCAGATTTCAAAGTGCTGGAAAGAAAAGTGCAATACGTGTAGTGGCAGATCTCTGTCAGGACACACCCTGTGGTTTGACCTTGGAATAACTCCAGTCTTGTCACATAACCTGTTTGTGTCTTTCCCAGTCCTTTGTCCAAAATATTTCCCATGTGCAATAAAGTGTTTATATATTTGTTTGTGTTTTAAAACCCACTATAAAGTTTAAGCTGTTTCTATGTATGTGAAAATAAAAGAATAGATAAATGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030156-Cd69:NM_001033122:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.8=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.7=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGAAATGGGCAAATGGC
R:
GTGACAGTTTCAGCTCCTGGT
Band lengths:
346-1552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: