HsaINT1006976 @ hg38
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr11:64841813-64844569:-
Coord C1 exon
chr11:64844410-64844569
Coord A exon
chr11:64841905-64844409
Coord C2 exon
chr11:64841813-64841904
Length
2505 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCCGCCCTGTGTCCCCTCAGCCA
3' ss Score
9.47
Exon sequences
Seq C1 exon
ATGGAGCGGCGGCTGCGCGCGCTGGAGCAGCTGGCGCGGGGCGAGGCCGGCGGCTGCCCGGGGCTCGACGGCCTCCTAGATCTGCTGCTGGCGCTGCACCACGAGCTCAGCAGCGGCCCCCTACGGCGGGAGCGCAGCGTGGCGCAGTTCCTGAGCTGGG
Seq A exon
GTGAGTGGCGGGGCGGCACGGAGCGGGGGCGGGCCTAGGGATATCGCGCCGAGACCCCCGCACCCGCAGACTTTCCCGCAGGGACCCGCACCCCCACGGGCTTCCCTCGCAGACTCCCTGCAGTGGCCCTGACGCGTACCACCGGACCCCCGCGGCCCGCACACTCGCCTGCACACCTCACCCTCACTCCAATTCTCACACACGCTCTCTCCCTCTCACAGACCCCGACACATGCACACACATACCAACTTGTGCTCAGGTATCGACCGCAGACGCATGTACCCAGTGCACCGCCTAGAGTCCCTTACAGATTTCCTTGCTTACAGGCCACACCTGACGCAGGACACACACAGACCCTCATGCATGTCACCCACTGATACACGGGCTCTGTTTCTCCTTCCTCTCGGATGCATTGAGACACACAACTCATGGAGAGACCCAGGGAGCGCTGCAGACCACCCCGACCGCATTGGCACTGCAAAACACACAGATCTGTAGGTATCGCACACTTGCAGACCTTCCCCCCACCAACACACACACCCCCAGCTCCCTGGGTACAAGACCACTGCAGCCTGGACTCAGGAACCGATCTCCAACCCTTGGCCTGTGCAGGCTGCTGGCCAAGCTCCTTGGGGGCTGTGGCGCCGGGGCCGGGGAGGGGGGCCTAGCTGGAGATGGGTCTGTACCTTTCCTGGTAGACTCATCTGAGTCATTGGGAGTGGCTGGCCCGGGGTGACCCTGAACCCACTGTGGGCACTGGCGCCAGCTGGAGGGTTCCCTGGTCACACCCTGCCGGGCCATGGGGAAAAGGCACGGGGGCCTGGCCAGGGCGGGGTGAGGCAGGTGTTTGCCCAGTGGGCAACTAGCGTTCCTGGCACTCCTGAGCTCTGGGAAGGCACAAGGCCTGGGGTAGAGGGGGAGGCTGCCACCTAGATGTGCCAGGGAGTTGTCCCCTAGCCCCAACCCTTCCATCCAGGGCGAGGCAGTCAGAGGCCCCTGCCTCTGTGCCTGTCTCCCTGGTATGCCTCCGTGCTATGCCTGTCTGCCTGTGTTGTTGTCACCCCCCCCATGACACCCACACACGTGTGTGTGTTTGCACACACATGTGTGCTCCTCCCTGACTGCCTCCAGCACCTCTGCCTGGGACCCCGGCATGGGGGCCCTCTGTTGACAATCTCCCAAGGTAACTCAAAGGGCTGTGACTCATTCCTCTCCTGCTTGTCTCTACTTGTCCCTGCTCCTGCCCGGAGCCCCCATGCCCTGTGGGAGGCCAGAGGATTAGGCAGCCTGTCCAGGGGCCTGGATCCTCCTGCCTGTGGGCCTGGGCTTCGGCCCTCTTCTGGCGGGTGGGTCCCTATGGTGCTGGCTTCAACTCCCACGGGGAGGCCCGGGGCTGCTCCTCCCCAGCTCCACACACAGACCTGGGAAAGAGACAATGAATTTCTGTAATGAGGTTTCCACCCCGCCCCCGCTGCGGGCTTCTGCCTGATAAACCTGTGGAACAGCTCTCTGTCCCACCCACAGACCCGCCCAGCTGGCAGGGAGTTTACCTCCTGGCAGGGGGAAACTGAGGCAGGGCGCCAGACCACAGCTGCCCCCCATCCTGACTGATCACTCCTGCCTCCCTAAGACCCAATTCCTTCCCAAAACCTGGGGCTAATCCAGGCCTGGAAAGTGCCTGGGAGTGGCTGGAGTTGCCCTTCCTGGAGGTATCTGGGATGTGAGGAAAGAGGACGTTCTTGACCAGACAAAAGCTTCGTCCAGACAGGGAGGCAGGGCTGGGAGTGAGAGAGCCGGTCAGGCCTGGAGGCATCCTGAGCACTCACGCCTTCAGGGGCTAGTGCTAGCACCAGGGAAAGGCATCTTTGTCCTGTTTGTGAGTCTCAGCACCTTGGCAGACTGGCATCCATGCCTCCAGCCTGAGGGGCCCCACGTGGGAAGCATAGAGCCTGTCCTCCCTGCCCTAGGGGCTGCAGGCCTCACCCCCAACCAGGCACCTCTATGCCTACAGGGTCCCGGGACCCAGGCCCACAGCTCCTGAATGGGAGAGAAGCCTCTCTGGGGATAAGGAATGTCACCCGTCCAGTTTCCTAAGACAGGCCCTGGCCTGAACCTGTGAGGGGGCCAAGAACTGTGAGGTGGGGGTAGGAATGGTGTCCCCATGGTCCCCAGGGTGACCTGGCCAAGCAGAGTCAGGCCGCAGACTGGGCAGGACTACAAGTCCCATCAGCCCCTGGGATGGAGGCTGCCTAGAGTCTGGGGCCAGGGGTCCAGGGAGGTCCAGGGACCAGGCGGTCAGCTGAGCCCGGCCTCTGACCTTCCGCACTTCCTGATCATGGCCAAAGGAGCACCAGTTCCTGCCACAACCCCTTGGCCCGAGGCTGTCCCTGGGGAGGTCATCCCTGCCTGGGCTCACAGGAGCGGCAGCTCCTGGCTTGCCCAAGGTGAGAGGGGGAATGGAGCCCTCCCTCCCTGCACTCTGAGTCCCGCCCTGTGTCCCCTCAG
Seq C2 exon
CCAGCCCCTTCGTATCAAAGGTGAAAGAACTGCGTCTGCAGAGAGATGACTTTGAGATCTTGAAGGTGATCGGCCGAGGAGCCTTTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219:ENST00000342711:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(4.9=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains