RnoINT0032671 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221673590-221676462:+
Coord C1 exon
chr1:221673590-221674004
Coord A exon
chr1:221674005-221676370
Coord C2 exon
chr1:221676371-221676462
Length
2366 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGTCCACTCTGTCCCCTCAGCTG
3' ss Score
10.15
Exon sequences
Seq C1 exon
CCTTCACCTTCAGCCGCGGCTCCCATTGGCCGGCGCGCACCTGCCTGTCCGTCGGGGGCGGGCTTGGAGGGCGGGGCGGGCGGCCAGGTGAAGGAGCGCGGGTGTCGACGGAGGAAGGTGACAGCGGGGAGGGCGGGAGGGAGGGGGGAAGCCGAGCAGGACGAGCTGCGGAACCACGGACCGACCGCCGGACGGACGGACGGGGCATGCGGGCGGCCTGGCTCTAGCCCGGGTTACGGGGCTCCAGCCGCAGCCATGGAGCAGCGGCTGCGTGCGCTGGAGCAGTTGGTACGGGGCGAGGCTGGTGGCAGCCCGGGGCTCGACGGCCTCCTGGATTTGCTGCTGGGGGTGCACCAGGAGCTCAGCAGCGCCCCCCTGCGCCGGGAGCGTAACGTGGCGCAGTTTCTGAGCTGGG
Seq A exon
GTGAGTGGTCAGGGCAACACCCGGGAAGGGAGGCTGGAGGGACAACGCCTGGAGCTCTGTGCCCCCAGACCTTTTCCCGGGAATGGCATACTCCAGAAACTTCCTCCTGAAGATGCACTAAGTCCTTGCGCTGTATCTAACGCTTGCCATCGGACTCCACGGCGTGCTCACTCACTTGCACCTTACTTCAAACTCCCAGATACAGAGCCAAGTACACAATGCACACTTCACACATACTCTCATTTCATTCCCAGCTACAGACCCCAGACATGTTGCCAATACACATCTTTCACAACGGTCACCTACAGGATTCCTTGGTCACACGTCACACCCAGAACATACATTCAAGTGGACACCCGTTTTGTGTCACATAAACAAACATACAGACTTTCTCAATTCCATCGTTCTTCAAGGGATGGGCACTTTTTTTCTGGGACCCCTCTCACCTGTCTAGCTCAGTCACAGACACGCACAAATCCTCGTCCTTCACCTTGCAGGCAAATTTCCTTCAATCTCTAGCCGGGACTAAGAACCACCCTCAGCCCCTTTGGATGACTTGGGGTCTCATTAGAAGTAGATCTGCACCCTTTCCTATTTGATTCATCTGAATCCCTGGGAATGACTGACCTAGGGTGACCCTAAGCCCATTGTGGGCACTGGTACCAGCACAAGGGTTTCCTGGACACACCTAGCCAGGCTTGGTGGGGAGGGCATAGGAATTGGGCCTGGAGAGTGGGGTGTTTGCCCAGTAGGCAATCAAAGTTCCTGGCCCTCCTGAGCTATGGGCAGGCACAAGGCTTGACGTAGTATGGTTGGGGGTCTGCCATCCAGTCCTGCCATTTCTTTCTGGGGTGAGAGCAGTGAAAGGGCCCTGCCCCCGTTGCCTGCCTGTTTCTCTGTGACTCTTATGTGTTATACATGTGTCTGATTTGTCATCACTCCCACATGACACTGTACCTGTGTGTATGCATGCGGTATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTATGTGTTTACACATATGTGTGTTTCTCCCTGCCTGCCTCTGGAGCCTCTGATTAGGACCCCAACATAGGGGACGTCTGTTGACATCTCCCGAGGTAACTCCAAGGCCGGGCGTGACTCACGCCTCTCCTGCCCCAACTTGTCCCTGCTCCTGCCCAGAGCCCCTACCCCTTCTGGCAAGACAAAGGTACCGGGCATCCTGTCTAGGAGATTGATCTGGGCACCAAGTTTGGCCTACGTGGCTGGTGGTCCCCTCACAGTCACCTCGAAGCTCTACAGGCTGGTGGCTGCTCCTCCCTAGCTCGGTGCATAAACCTGGGAAGAGACAATTAATTTCTGTGCTCGGTTTCCACACCTCCCCCACTGTGGGGGTTCTGCCTGATAAACCTGTGGAGCAGCTCTCTGTCCCACCCACAGGCCCGCCCAGCTGGCAGGGAGTTTACCTTCTGGCAGGGGGAAACTGAGGCAAGGTGCCAGACCATTGATGTCCCCCAAGACTCAGTGCCTGTTCCCTGGCCTAAGACCACTCCAGTTGTGGGGAGAGCCTGGGAGTGGCCGGACATGGCCCTTGTGGAGGTGGTGGTGGGGCAGGCGGATAGACTGTGATGGAGGAGGAGGTTCCTGCCTGTGTGAAAGCCCCATCCAGAGAGGGAGGCAGGGCTCCAAGTGGCAGGGCTATCAAGCCTGGAAGGAATCCTGTGTGCTCACACCCTCAGGTGCTGGCACTGGGCACCAGGTGAAGCTTTTGGCCCTGTTTGTGTGTCTTGTGAGTACCTGAGCAGACTGGTATCTGCTCCTGACCCAGGGGCCCCACTTGGGCAACGCAGAGCCTGTCTTTCTGGAGCACTGCAGAAACTGTCCTCCCTGCCCTCAGGGGCTGCCCCAGGCCTTGCCTCCGGCCAGATTGCTTTGTGCCTACAGGGTCCCCAGACCCAGGCCCACAGTTCCTGGATGGCAGAGAAGCCTTTCTGGGGACAAAGAATGTCACCTATCCAGTTTCCCAGATAGGCCCCTGGGCTGGCCTTGTGGGGTCAAAGGCTGTCAACTAGGGGTGAGAGTGGTATCTTTATTGCCTCCAGGGTGACCTGGCTGTCAGGATTAAGCCCCTGGCTAAAGAAGACCACAAGGTCCCTCTGTGCCTCAGATAGAGGCTACCTGGAATCTAGAGCAGGTGCCCAGGGAGGTTCTGAGGCCAGGTGGCCCACTGAGTCAGGACCCTTACCAAGCTCGTATCATGACCAAACAGGCCTGCTTCTGATCTGTCCCTTGGCTGGGTTGTCTCTGGGAAAGTCACCCCTGTCCTAATCTCATGGGAGGTTGCAAGGAAAAAACGCTGTCCACTCTGTCCCCTCAG
Seq C2 exon
CTGGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTTTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(4.9=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]