HsaINT1007171 @ hg38
Intron Retention
Gene
ENSG00000142615 | CELA2A
Description
chymotrypsin like elastase family member 2A [Source:HGNC Symbol;Acc:HGNC:24609]
Coordinates
chr1:15462733-15463522:+
Coord C1 exon
chr1:15462733-15462861
Coord A exon
chr1:15462862-15463385
Coord C2 exon
chr1:15463386-15463522
Length
524 bp
Sequences
Splice sites
5' ss Seq
AGGGTTCGT
5' ss Score
3.88
3' ss Seq
TCGCCTCCACACTCACCCAGGAA
3' ss Score
4.91
Exon sequences
Seq C1 exon
CTCCTCCAGGACCTACCGCGTGGGGCTGGGCCGGCACAACCTCTACGTTGCGGAGTCCGGCTCGCTGGCAGTCAGTGTCTCTAAGATTGTGGTGCACAAGGACTGGAACTCCAACCAAATCTCCAAAGG
Seq A exon
GTTCGTTTCTGTCTGGGTGCACTTGGGGGTGAGGTTGTCAGGGAACAGATGGGGGTCTCACAGAGGCAAGGGTCTCAACCACACCACACCCCCTCTGCTTCTTCTACAGGGAGGGGGAAGGAGCTCTGGCCTCTTAGATGTGGAACCAGCTCCAAAGATGTCTGGGGTGGGGATGTGACCTGGGGAGGGTGAAGCAAAGACTGCCAGAGCGACCTGGGTTTGCTGCCAGTTACACCTGCAGGGCCCCTGTCCGCTGAGCATGTATCTACTTCATGCCAGGTCCTGGGGACACAGGGACAGTGCTGTCAACCCTGTGACTGTCCCTGGAGTAGGACACAATCTCTCCTGCCTTCCCCCTTTCAACAAGGCCCTCTGCATTTTCAAACATGCCCTGGGGCCCTGCCAGTCAGAGCAACCTGGGGTAACAGGGTACAGGGAAGATGACAAGGTCTCCAAGCCCTCCAAAGCCCACAGGGCAGGAAAAGTCAACCCGGTCCTCATGCTTCGCCTCCACACTCACCCAG
Seq C2 exon
GAACGACATTGCCCTGCTCAAACTGGCTAACCCCGTCTCCCTCACCGACAAGATCCAGCTGGCCTGCCTCCCTCCTGCCGGCACCATTCTACCCAACAACTACCCCTGCTACGTCACGGGCTGGGGAAGGCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142615:ENST00000359621:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCAGGACCTACCGC
R:
TCTGCAGCCTTCCCCAGC
Band lengths:
266-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains