HsaINT1009377 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:151971545-151973923:-
Coord C1 exon
chr2:151973669-151973923
Coord A exon
chr2:151971705-151973668
Coord C2 exon
chr2:151971545-151971704
Length
1964 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
AGTTTATTTGTTTTTATAAGGAA
3' ss Score
5.4
Exon sequences
Seq C1 exon
GGCAGATAAAATGCCAGGTCTGGACTGCCTCTGGGGATAACCTCACCCTGTGGGATGTGAATGAATAGCATCTTGCCTGGTAAATCCACAGGAATTGATAAGGCAGGCGCAGTTCTCCCAAACAGGCCTTTTCTCTTTAAGCTGTAGCTGTGGTTTCTGCAGCAATTTTGTTTTTGCCTTGAAAGAGGTGCTCTGGATTATCACACCTCCATGTATGACAATTTGTACCTGCATGGAATTGAAGACTCGGAGGCT
Seq A exon
GTAAGTATTTTCATAGATAGCTAATTCCCTCTCCCCTCCTCTTCCTCCTCCCACTATCCCCTCCACCCCCCCGCTTCTTATTTCTTAGGCAACGCAGGGAACATGGAGCAGAAAGCTAACATCATTCTGGGGCTTGCTGGCTGCTGTGTAAATGTTCTCTGTGTAGTTTATAGGTAACTAAAATTATTTATTGTCAAGCAAAAAAGAAATTAGGGTGATGGCAAAGCATTCAAGAGTGTAGGCTGTTTGAATTTATACATTACCGGGTCCACGTTTGATCTCACCAGGGGTAACTGCTCCTTGCAGACTGGTTTAAACTATGCAGAAAGTGCCTATGTTTTCCAATAGCAGGGTTCATAGAAAAGCCTCATTCATTATATAATACACATTGTTTGTTGAGCTAGCATGAATGGAAGTTCCTAAGCTGTGGCTGTATTATTATGTGCTTTCTGGCCAAACAAGCAGTGCAGATATACTGCTTCTTTGTTAAGGAAATCAGATGCTAGGCTTGTGGCCATACAGCAATCCAGTGCAGAGGCAGTGGGCAGTGTTCCTATACTCTACCTTGGAAGAGCGAAGCAGACTCACGTGTGTTTTGGGTTAGAGAACTGGACTCCTTCTCCCCCCTAGGTCAGGCTCATGCAATCTGTTAAAATCAGGGTGAAATAATTTCCTGAAATCCCTGAAATCATACCATAGAGTGCTAGCTTTTAAATATAAGGTAAAGCTGATAATTGAATCTTTCTTTTGACTCTTGCTGGTGGTAGTTCCTATTTTTTTCATCAATACACAGAAACCTCGCAAGGTAGAATGGCTGGGGGTGGTTAATGGGAAGTGCTGTGGGGAGTCTGAATTTTATGTGAGTGCAGTGCCAATACATGTTGCTACATTTGAAACAGGAGTGTGTTATATAAGATTCTCTGGCTAAACCACCAAATAAACAGGTTATAACAAAAAAAAAACAAAAAACAAAAAAAAACCCTGTGGTATACGTCAATGCAGACGTATATGTCTAATGATGTGCTATCCATGAAAGATAGAAATCCTCAGTTCTGTTAAGGCATTCCATTTTTCCTTCCTGTCTGTGTGTTTTCTCTAACTCTAACTCTGTTTCCGCAAAGTCTCTCTGCGTGTTGCCCAACGTGCTCATAAATGATCAGACTGTCAGTGTATTGTAAGGGACTGTAGTCTGAAACATTGGTGGCTGAAATCAAGAAGGTCCACACTTGCAGGTGGGGTGGGGGAATGGCAAAGGCAATTACAGGAGTTCAGTAAGCCAGCTTCCTGGGCTGGTTTCTTCAGAAGGCCTGATCACTTCTTCTACCCCTTCTCTGCTCACTCAGTTATGAAACCTATGATGCCTTGTGAATTGTAAGTTTTATTTTCGGCCATTGATTTTAAACTTGGGCAGGCAGTGAATTGCACCGAAGTGGACTGGAGTCATTTTAGAAATGCCTGTAGAAACTGGCTGCTGTGAAGAGTTGGCTAGGAACTAATAAATCCAGCTCCTTGTTCTCCAGAACTGTATACATTTCAGATGCACTGGTTCAGAGGGGAGCCATTATAAGTATGAAAACATTTTTTTTTTTTTTTTTTTTTGCCTTTGGGTCCAGTGTCACAGGACAGCTGAGTTTTTCTGTAAGATGGGAAGTGAAGAGTGCAGTGACTTGACTCGGTGGCAGTAGTTGATGGCGGGTAGTGCTAGGTACTGCAGTGCTGTACTCCTGGTGACTCAGTGGTGGCCAGCAGGCTGAGATCCTCCGGGCTGTGCACATCTGTGGAGGTGAGGAAGGTGGGAAACATGAGGAGTGGAGTTGGGCATCTGGCCAATCCTCAGTTGAGAGTATGGGAGGCTTTCAGGTGGGCGGGATTGAAACCGTGTCACATAAATCAGGGGAAGAGAGAGATGTTCGGAGGGGTGAACTGACTCTGAATGCTCATTTGAGTTTATTTGTTTTTATAAG
Seq C2 exon
GAAGAATAATGTGATGTGTTACCCAAGATGGTGTGAACAGAGCTTCAAGCCAATGGAGAAGACTAGGCCTAAATAGCTGACCTGGTGAAGTGACACATAAAGCCACACCTGGAGTGCCACCTCCTCAGCAGTCTTTCTCAGTGCCAATGCATTTATGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283228:ENST00000637224:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000380490, ENSP00000390161, ENSP00000399242, ENSP00000489818, ENSP00000489876, ENSP00000489883, ENSP00000490124, ENSP00000490138, ENSP00000490176, ENSP00000490249, ENSP00000490250, ENSP00000490252, ENSP00000490276, ENSP00000490430, ENSP00000490443, ENSP00000490488, ENSP00000490607, ENSP00000490651, ENSP00000490795
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCTCTGGGGATAACCTC
R:
GCACTCCAGGTGTGGCTTTAT
Band lengths:
349-2313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains