HsaINT1009425 @ hg38
Intron Retention
Gene
ENSG00000259221 | CTD-2050N2.1
Description
NA
Coordinates
chr15:47395561-47396732:-
Coord C1 exon
chr15:47396351-47396732
Coord A exon
chr15:47395689-47396350
Coord C2 exon
chr15:47395561-47395688
Length
662 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ATTTGGTCTTTGTCTTCCAGGAC
3' ss Score
10.95
Exon sequences
Seq C1 exon
CCAAAGAAGATTAACATTTGAGTCAGTGGACTGGGAGCTGCAGATCCACCCTCAATCTGGGTGAGCACGGGCTAATCAACTGCCAGTGCAGCTAGGATAAAGGCAGGCAGAGGAATGCGGAAGGACTAGACTGGCTAAGTCTTCTGGCCTCCATCTTTCTCCCATGCTGGATGCTTCCTGCCCTTGAACATCAGACTCCAAGTTCTTCAGCTTTTGGACTGTTTGACTTACACCAGTGATTTGCCAGGGGCTCTTGGGCCTTCAGCCACAGACTGAAGGCTGTACTGTCAGCTTCCCTACTTTTGAGATTTTGGGACACGTACTGGCTTCCTGGCTCCTCAGCTTGCAGACGGCCTATCATGGTACTTCACCTTGTGATCAT
Seq A exon
GTGAGTCAATTCTCCTAATAAACTCCCCTTCATATATATATATATATCTATTCTGTTAAATCTGTCCCTTTAGAGATCCCTGACTAATACAGCCCCTAACTTAGTCAGCTTGAGCAGCCGTAACAAAATACCATAGACTGGGTGGCTTAAGTAACAGACATTTATTTCCTATAGTCCTGGAGACTGGAAGTCCAAGATCAGGTGCCAGCACGGTCGGGTTTTGGTGAGGGCTCTCCTCCTGGCTTGCAGAGGGTTGCCTTCTTGCTCTGTCCTCACATGGGAGACAAAAAAAGCTCTGGTGTTTGCTGGTGTCTCTTCCTCTTCTTATAAAACCATGAATTTCATCATGAAGCTCCACCCTCAAGACATCATCTGATTCTTATTACCTCTCAAAGGCCCCATCTCCTACTAATATCACATTGGGAGTTAATTTGACATATGAATTCTGGAGGGATGCAAACATGCAATCTACAACAGCTCCATATATTGAGTAGCTGATCCTGTATATGAATATTGTACAAATGAGATGTAGGTGAAGTGACCCTTACACTGTGCCTGCCCTCTATGCTAGGTATACGAACCTACTGCATTTCTATGCTCCTTGCTTTCTTCTGTGTGTTTTAAGTTGATTTGAATATCAGCATTTGGTCTTTGTCTTCCAG
Seq C2 exon
GACCACTGGTATAGCTTGCCTGGTGGTGGACTTGGAGGATACCATTGCATCAGGGCATTTCTCCACATGATAGCTCCTGCCTGCTGGACAGGTCCTCTCTTGACTATGTGTATTCTCCAGAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000259221:ENST00000559799:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGGACTAGACTGGCTA
R:
CAGCAGGCAGGAGCTATCATG
Band lengths:
352-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains