HsaEX0057172 @ hg38
Exon Skipping
Gene
ENSG00000137872 | SEMA6D
Description
semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr15:47184101-47470545:+
Coord C1 exon
chr15:47184101-47184418
Coord A exon
chr15:47412393-47412472
Coord C2 exon
chr15:47470474-47470545
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGACTTTTGGCAGGAT
3' ss Score
7.93
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTAACCGGTGGAAGTGTCAAAGAGGAAGGAGTGGAGGGCTGCTGAGGTGACAGGGTGTGGTCTGTGAGGGAGCGGACGAACCCGGAGAAGAGAGCAGAGAGACCCACCAGGACTAGGAGGCAGCGGGGAGCGTGCCTGCGTCGCTCGGAGCGGTGACAGCAAGGAGCGCAGCGCGGAGGCCGGGCGGCAAGGGGAGTTTCCAGTCCTCGATAAGTGGAGTCCCTGCTCTGCGCTGCGCCAGCGCCTTCCGCCTGGGCCCGCGGTGCTAGACACCTGCCGAGTCCGAAGCGGGAGTCAGGCTGAGCCTTCGGCCCCCAA
Seq A exon
GATCTCCAACCTGAGCATATGCCAGTTGACATGGGAACACTGAGGCCAGCAATTTAAGGATTTCACATTTGCTTGCAGTG
Seq C2 exon
AATGCGTAATCCTGGATCTCTTGTTCGCAAATCGACAGCCTGAAGCCCTCTGGAAGCCCAAGACTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137872_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGTTTCCAGTCCTCGAT
R:
GGGCTTCAGGCTGTCGATTTG
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development