HsaEX1036487 @ hg38
Exon Skipping
Gene
ENSG00000137872 | SEMA6D
Description
semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr15:47184101-47412472:+
Coord C1 exon
chr15:47184101-47184418
Coord A exon
chr15:47241240-47241370
Coord C2 exon
chr15:47412393-47412472
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCATTCGCATTTAACTCTAGGAG
3' ss Score
8.32
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTAACCGGTGGAAGTGTCAAAGAGGAAGGAGTGGAGGGCTGCTGAGGTGACAGGGTGTGGTCTGTGAGGGAGCGGACGAACCCGGAGAAGAGAGCAGAGAGACCCACCAGGACTAGGAGGCAGCGGGGAGCGTGCCTGCGTCGCTCGGAGCGGTGACAGCAAGGAGCGCAGCGCGGAGGCCGGGCGGCAAGGGGAGTTTCCAGTCCTCGATAAGTGGAGTCCCTGCTCTGCGCTGCGCCAGCGCCTTCCGCCTGGGCCCGCGGTGCTAGACACCTGCCGAGTCCGAAGCGGGAGTCAGGCTGAGCCTTCGGCCCCCAA
Seq A exon
GAGACACTGTAAGAACCACGGAGTGTTAAACTTGGGGCTTGGGAATCAGAGTCCATCCTTGAATTTCACAAAAGAAACGACCGAAATCAAAAGAAGGCAAGATACAGCTGTTCGCATTTGCAGACCTGTAT
Seq C2 exon
GATCTCCAACCTGAGCATATGCCAGTTGACATGGGAACACTGAGGCCAGCAATTTAAGGATTTCACATTTGCTTGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137872_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGCAGAGAGACCCACC
R:
ACTGGCATATGCTCAGGTTGG
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains