MmuEX6104550 @ mm10
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124142934-124400364:+
Coord C1 exon
chr2:124142934-124143055
Coord A exon
chr2:124298575-124298655
Coord C2 exon
chr2:124400243-124400364
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTGACTTTTGGCAGGAA
3' ss Score
7.16
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTGTTGAAAGAAGCAAAGACCATCAGGAGTAAAAAAGAAACTTGAAAACCAGAGTCCATCCAAAGATATCAACAAAGGAAACTCCTAGAATCAAAGGAGAGAAAGGCGGTGTGCAGCTGGAG
Seq A exon
GAACTCCAACCTGAGCAGATGCCAGTTGACATGGGAACTCTGAGGCCAGCAATTTAAGGATTTTCACGTTTGCTTGCAGTG
Seq C2 exon
AATACTGTTGGAAAGTCAGGCCTTCTGCAGAGCAGCTGTCTCATGAAAGGAACCTCCATATGAGACACCCAAACTACACTCCCTACAACTTGTGCCTTTGTCATGAGCCATGCTGCTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200-'5-11,'5-4,13-11=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAAAACCAGAGTCCATCCA
R:
GGCACAAGTTGTAGGGAGTGT
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types