HsaEX0057172 @ hg19
Exon Skipping
Gene
ENSG00000137872 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:16770]
Coordinates
chr15:47476241-47762742:+
Coord C1 exon
chr15:47476241-47476615
Coord A exon
chr15:47704590-47704669
Coord C2 exon
chr15:47762671-47762742
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTGACTTTTGGCAGGAT
3' ss Score
7.93
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CGAGGGAGCGGCAGGAGCACGTGGGCTGAGTGGGGGTGGGAGGACGCAGACGGCGGAGTAACCGGTGGAAGTGTCAAAGAGGAAGGAGTGGAGGGCTGCTGAGGTGACAGGGTGTGGTCTGTGAGGGAGCGGACGAACCCGGAGAAGAGAGCAGAGAGACCCACCAGGACTAGGAGGCAGCGGGGAGCGTGCCTGCGTCGCTCGGAGCGGTGACAGCAAGGAGCGCAGCGCGGAGGCCGGGCGGCAAGGGGAGTTTCCAGTCCTCGATAAGTGGAGTCCCTGCTCTGCGCTGCGCCAGCGCCTTCCGCCTGGGCCCGCGGTGCTAGACACCTGCCGAGTCCGAAGCGGGAGTCAGGCTGAGCCTTCGGCCCCCAA
Seq A exon
GATCTCCAACCTGAGCATATGCCAGTTGACATGGGAACACTGAGGCCAGCAATTTAAGGATTTCACATTTGCTTGCAGTG
Seq C2 exon
AATGCGTAATCCTGGATCTCTTGTTCGCAAATCGACAGCCTGAAGCCCTCTGGAAGCCCAAGACTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137872_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGTTTCCAGTCCTCGAT
R:
GGGCTTCAGGCTGTCGATTTG
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)