MmuEX6104550 @ mm9
Exon Skipping
Gene
ENSMUSG00000027200 | Sema6d
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:123968670-124315748:+
Coord C1 exon
chr2:123968670-123968791
Coord A exon
chr2:124124311-124124391
Coord C2 exon
chr2:124315721-124315748
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTGACTTTTGGCAGGAA
3' ss Score
7.16
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTGTTGAAAGAAGCAAAGACCATCAGGAGTAAAAAAGAAACTTGAAAACCAGAGTCCATCCAAAGATATCAACAAAGGAAACTCCTAGAATCAAAGGAGAGAAAGGCGGTGTGCAGCTGGAG
Seq A exon
GAACTCCAACCTGAGCAGATGCCAGTTGACATGGGAACTCTGAGGCCAGCAATTTAAGGATTTTCACGTTTGCTTGCAGTG
Seq C2 exon
ATTCTACCAAGACAGAGCCATCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200-'1-7,'1-4,4-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAAGCAAAGACCATCAGGA
R:
TGGAGATGGCTCTGTCTTGGT
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: