HsaINT1010480 @ hg38
Intron Retention
Gene
ENSG00000138109 | CYP2C9
Description
cytochrome P450 family 2 subfamily C member 9 [Source:HGNC Symbol;Acc:HGNC:2623]
Coordinates
chr10:94938671-94942020:+
Coord C1 exon
chr10:94938671-94938850
Coord A exon
chr10:94938851-94941857
Coord C2 exon
chr10:94941858-94942020
Length
3007 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
ATCTCTGTCTACTTTCCTAGCTC
3' ss Score
7.78
Exon sequences
Seq C1 exon
GAGAAGGCTTCAATGGATTCTCTTGTGGTCCTTGTGCTCTGTCTCTCATGTTTGCTTCTCCTTTCACTCTGGAGACAGAGCTCTGGGAGAGGAAAACTCCCTCCTGGCCCCACTCCTCTCCCAGTGATTGGAAATATCCTACAGATAGGTATTAAGGACATCAGCAAATCCTTAACCAAT
Seq A exon
GTAAGTATGCTCCTTCAGTGGCTTGCAAAAGGTAAGTAAATTCACCTGTATTTTTTAAATAAAGTGTATCCCTAGAGGTACATGTTACAAGAGGTAATGGTAAAGTAAAATACTTTGAAAGGCTTTTGTTGCCTTTTCCAGTCTGTCAGTGTCAGAAATAGTGGAATGAAACCATGTATTTTGTGAGTAGAGAAAGATTTGGGTCTTTGCATGTTAGATTCAAAATAACAAGTGTCAATAGTTTGAAAAGCTGTGTTCCTTCTTCATTTCATAACCATTTGCTATAATTTTTGGCTGAAGGTAAATGGTAAGGTATTGTGGGATCTGGTCAGCAGCCCACAAAGCAACTGGGCTCTCTCTTTTTTCCCAGGTGGATCGGCAGGTTGAGAAATAATAGACACACAAGATAGTGAAAGCTGGGTCCAGGGGGGTCACCGCCTTCTGGTCCCATGGTGCCAAGAATGCACTGGATATACCAGCATTTATTATTAAGTTTAGTGAGGGCAGGGGTAGGTTAGTGAGGGATTTAGGGTCATTTGATTATGAGGTGAGATGGTCACATGGGGATGAAGTAATTCTTTAACATAACATTTGTATGTAGAAGTACAGTACATTTGTATGTAGAAGTACAGTATACGGAGATAAGAATTTACAATATAGTGTGTGCGTCAGTAATTTCTAACAGAGCCTTAAAACAGAAACACAATCTTTCCATAACCTATGATTAGCAAGATATTAATCAGCAGTAACAATTGCAACAAAAGCTGGTTACAAACAATCCATGGAAATAGGATGTGAAGCTAGACAACCAGTTAGACCAGAAATTCTCAGAAGGGAGTATGCCTTAACCCTAAAGAGGCCTAGAAGAGCCATGGCAAGATGAGGGCATTTATAGCCCTATCTTATCCATATGGACAGGTGCCCCCCATGCGTCCATTTATAGGTTCTCCACAAAGGTCGCATTCCATTCCCAGAGCTATGAACATCTGCTTTTCTGGGATAGGAATCTTGGTGATGTGAAACCTCTCTGACTGCACGTCCATTCATAGGCTCTCTGCAGGGGGAAGCACATCACGCGCTGTTGGCTCATTCTGGCAGTCCAGCCTGGCACTGTCCTTACACAATCCTGCATGCAATTTTGTATTTACAATAATCGGGAGCATTTCATCTTTTATTCCGTAGCAATAGTTTCAGGGGGGGTCTCCCTACAGTAAGGAACATGTTTGTTATTAGAGATTTTATTAAATAAGTCCTCTACTATATTAGCCATGTGTTTTATTCAGAATAGCCATGAAAATTAAACTTCTCTGAAGAATTAATTTATGCCTGTTGTAAAGGAAATAACTGTGGGTTCAGGACCAGCAAAAGCAGATAAGTGGTAGAAAAGAAGTTATAGACTTCCATTTTTAGATCCACAAAGTACTGTTTTAATTATACTATAGCTACAATATATAAACCCCAAAATGACCTTAGCATTTAGTAATGGTAGGAAGAAGGTCAGAAGATGTATAAGTATTAGGGTTTTTTCTCAAGTGAAAGATGGTTTAGCAGTGTTAATATGATATGTGAACACCCCTCGTTGTGTAATAATTACCATATACAGAGAGTAAAGGGCTGCAATTAGTATATTAAGTCTTATAAGCATGATGGTATGATTAGATCAAGAGAATGACGCTGTAGTTATGAAGACTACTCCTACTAGATTGATGGTAGGGGGCAGGGCAAGGTTGGCAAGACTAGCTAGGAGTCATCACATGGCTATCAGGGAGAGAAGTGTTTGAAGGCCTTGTGTTAGTAGTATGGTTTGGCTGTGAACTCGTTTGTAGTTTGAGTTTGCAAGGCAGAATAATAGGGATGAGGTTAGTCTGTGGGCAGTTATTAGGGAAGTTGCACTGGTAAAACTTCAGGGGGTTTGAATGAGAAAAGCTACGATAACAAGTGCCATGTGGCTTATGGAAAAGTAATGAGTGATTTTAGATCAGTTTGGCACAGACAAAAGGAGCTTGTTATGATTATTTCTCAAAAGGATAGTAAGAAGGAGGAATAAGCTATAAACTCTGTTAGGGGGTTAAGAATTAAGGTGATTTGTATAATCCTATAGCCATCTAATTTTAGGAGTACTGCTGTGAGGACTATTGACCTGGCAATTGCGGCCTCTATGTGGGCTTTTGGGAGTCCTAGGTGGAGTCCATAGAGAGATATTTTTAGTATAAATGCTATGATGCATGCTAATCATAAAAGGCTATTAAACCAGGAAATTGTTAGTTCTTGAAGCTGGGTATTGGTCTTAAGGTAGACTCGAAAGTGCTGATAAATTTCTCAAGCATCAGTGTTTGAATAAGCGGAGTTTCAAATTTTGGTCTGCTGTACATTAGCTGTGAGACACTGAAAATGAATTTGTCATTCTCTGAGCTCAGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTACTCTGTAGCTCAGGCTGGAGTGCAGTGGTACAATCTTGGCTCACTGCAACCTCCATCTCCCAGGTCCCCATTCAAGAAATTCTCCTGCCTCAGTCCCCCAAGTAGCTAGCATTACAGGCATGCACCACCATGCTCAGCTAATTTTTGTATTTTTAGTAGAGACGTGGTATCACCTTGTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCAGGAGCCACCACACCTGGCCGTTTGTTTAAAATAGAGTAAATAGACCTGCTGAATATGTTGATGTGAGTATTAATTGTAATCTGCATAGCAATTGTCTGACCATTGCCTTGAACATCACAGGCCATCTGAGTGGCAAGTATAATCATCATCATGTTTCTATTTAAAATTCAGAAATATTTGAAGCCTGTGTGGCTGAATAAAAGCATACAAATACAATGAAAATATCATGCTAAATCAGGCTTAGCAAATGGACAAAATAGTAACTTCGTTTGCTGTTATCTCTGTCTACTTTCCTAG
Seq C2 exon
CTCTCAAAGGTCTATGGCCCTGTGTTCACTCTGTATTTTGGCCTGAAACCCATAGTGGTGCTGCATGGATATGAAGCAGTGAAGGAAGCCCTGATTGATCTTGGAGAGGAGTTTTCTGGAAGAGGCATTTTCCCACTGGCTGAAAGAGCTAACAGAGGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138109:ENST00000260682:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains