HsaINT1010493 @ hg38
Intron Retention
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450 family 2 subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr19:41121458-41122133:+
Coord C1 exon
chr19:41121458-41121618
Coord A exon
chr19:41121619-41121956
Coord C2 exon
chr19:41121957-41122133
Length
338 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
CTACTCTGTCTGGTCCCCAGTTG
3' ss Score
8.31
Exon sequences
Seq C1 exon
GCGAGCCCTTTGACCCCACGTTTGTGCTGAGTCGCTCAGTGTCCAACATTATCTGTTCCGTGCTCTTCGGCAGCCGCTTCGACTATGATGATGAGCGTCTGCTCACCATTATCCGCCTTATCAATGACAACTTCCAAATCATGAGCAGCCCCTGGGGCGAG
Seq A exon
GTCAGCCAACTGAGTCCAGCAGGGGCAGGGTGTGGGGTCCGCAGGATCTAGGAATGGAGAGGAAACAGTGGGCGGGGAAAGGGCTGTGAATGGCCCGCCCAGGGCCCGCCCCCTCCCATCTGACCCCACCCAGAGTTACACGGCCACGCCCACTCCCCTCCACTGAGCATTTATGGCCGCCATTGCCTCCTTCCCACTCCCCCTCAGCCCCAACCCCCACCCCGGACCTGGCTGCCCTTTGAGACCCTGTCCCTGCCTACCTAATCCACACTGACCCCATTCGCCCCTGAACACCCTTTGTCCTCCTCCAAAACCCTCCTACTCTGTCTGGTCCCCAG
Seq C2 exon
TTGTACGACATCTTCCCGAGCCTCCTGGACTGGGTGCCTGGGCCGCACCAACGCATCTTCCAGAACTTCAAGTGCCTGAGAGACCTCATCGCCCACAGCGTCCACGACCACCAGGCCTCGCTAGACCCCAGATCTCCCCGGGACTTCATCCAGTGCTTCCTCACCAAGATGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446:ENST00000331105:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTTTGACCCCACGTT
R:
CTGCCATCTTGGTGAGGAAGC
Band lengths:
334-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains