HsaINT1010532 @ hg38
Intron Retention
Gene
ENSG00000186160 | CYP4Z1
Description
cytochrome P450 family 4 subfamily Z member 1 [Source:HGNC Symbol;Acc:HGNC:20583]
Coordinates
chr1:47084620-47084978:+
Coord C1 exon
chr1:47084620-47084744
Coord A exon
chr1:47084745-47084823
Coord C2 exon
chr1:47084824-47084978
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTCCATCTTCCCTATTCCAGTAC
3' ss Score
8.74
Exon sequences
Seq C1 exon
AACAAATGGGAGGAACACATTGCCCAAAACTCACGTCTGGAGCTCTTTCAACATGTCTCCCTGATGACCCTGGACAGCATCATGAAGTGTGCCTTCAGCCACCAGGGCAGCATCCAGTTGGACAG
Seq A exon
GTCAGTGACAAAAGGAAGGTAATTGTTTGCCAATAACTGTGTCACCCACTAACATGTTGTTCCATCTTCCCTATTCCAG
Seq C2 exon
TACCCTGGACTCATACCTGAAAGCAGTGTTCAACCTTAGCAAAATCTCCAACCAGCGCATGAACAATTTTCTACATCACAACGACCTGGTTTTCAAATTCAGCTCTCAAGGCCAAATCTTTTCTAAATTTAACCAAGAACTTCATCAGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186160:ENST00000334194:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAACACATTGCCCAAA
R:
GTTCATGCGCTGGTTGGAGAT
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains