HsaINT1013636 @ hg38
Intron Retention
Gene
ENSG00000104760 | FGL1
Description
fibrinogen like 1 [Source:HGNC Symbol;Acc:HGNC:3695]
Coordinates
chr8:17874362-17882179:-
Coord C1 exon
chr8:17881999-17882179
Coord A exon
chr8:17874522-17881998
Coord C2 exon
chr8:17874362-17874521
Length
7477 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TTACCTTGTTTTAAAAACAGATT
3' ss Score
6.85
Exon sequences
Seq C1 exon
GCGCTCGAGGACTGTGCCCAGGAGCAGATGCGGCTCAGAGCCCAGGTGCGCCTGCTTGAGACCCGGGTCAAACAGCAACAGGTCAAGATCAAGCAGCTTTTGCAGGAGAATGAAGTCCAGTTCCTTGATAAAGGAGATGAGAATACTGTCATTGATCTTGGAAGCAAGAGGCAGTATGCAG
Seq A exon
GTCAGAATGGACTTTTCTTAAGTGTTTCTATAACTTACATTATGCACCCATGTACAGTGATGGTGCTAGTTATTTCAGGCTTTTCCTATTTCAGTAACAAGCAATATGAAGCATTATATCTATTGTAAATGTCTTCTTTCACACTTTACTTTTTTTTTTTTTTTTGAGGCGGAGTCTTGCTCTGTCGCCCAGGCAGGAGTGCAGTGGTGCAATTTTGGCTCACTGCAAGCTCCGTCTACCAGGTTCACACCATTCTCCTGCCTCAGTCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCAGGCCCGGCTACTTTTTTTGTATTTTTAGTAGAGGCAGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCACCTGACCTTGTGATTCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCCGACACTTTACTTTTTTCTATCTCTGCCAGGGCATTTAATGTGAATGCTAAATATCTGAGAATTTATATCATTTAATAAGAAATCAGGACAATAGATTGTTTAAATACTGATGGACACAGCCAAGTGCGGTGGCTCACGCCTGTAATCCCAGCACGTTGGGAGGCCTAGGTGGGCGGATTACAAGGTCAGGAGATCTAGACCAGCCTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCAGGTGCCTGTAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGTCGCAGGTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACACAATAAGACTCTGTCTCAAAAAAAAAAAAAAAATCCGTGTACACATGGCAGATTACAATTGGGAATTTTTGCATTTGAGCTTTGTGTTTGTGTATCTTTCCTTGTTGCATGTATGCAGTTTTCCCTTCTGAAATCCTAATGTGCATTAGGGTGGCAAATAAGGTAAAAAATAAAGGAGCAGAAAAAGGAAAAAGAACCAGAATTACTAAGGAAAATAAAAGAGTAGTTTTTTATATGTATATTTTCTGATTTCATAATGTTCCTTTCAATGAGGTATTTCTCCCCAGAAACTAAATGATTTTAAACTGGCAACACATTACACACATTGCTGCACAAATCATTATTCTCTATGGAAAACTGTTCACTTGAATTCCTCCAGAAGTAAAAGGTATCTTTTAGAGTAAACGACGATTGTCAGAAACAAAAAGAATGCTAGCGAAAGCACTTTGTCCATATGTCTATTCTAGCACTACCATGCTACATTGTAATTTCTGTTTATGAGTCTATTGAGGTCAATTAACTGGGCACTCTGTGAGGTCTAGAATGATATTTAATGTACTTTTATCTCCCTGTTGGCTATTAGAGTGCCTGAAACATAGTAGATCCTCATATTCAGGAATGAAAGGAAGGTAGTTCATAGGGAGAGGAATAGCAAGATAAGCAAATATAAATTCGGACACCTATTTGACTAGAATTGAAAGACTGTAGAGGTCAAAGAGTTGCCAATCTTATGGGAATAGAAACATGTTTATTTTCTGCTTCTAATCATACAAGTGTAGGATATAGGAGTTGTGAGAGTCTATGCTTCCATAAAATGCTTCAGGGCACCTGGCTGGCTCACACTGTAGCGCATGAGACTCTTAAAATGCTCCCTTTTTTTCTACCAAGATCCTTATCTCCCTCTGCTCAGACTCCTCGCCCTGGGCTCCTGCTTCTCTTATGGCCAGCATCTTGATCCAACTGCCCTCCCTCTGGCCCTTAGAGATCAGAAAGAGGCCAGAGCCAGTGGTCTGCAGTAGTGGGGATGGCTATAGCCTGAAGATGGCCAGTGCCTCTGGAGCCAAGAGGAACCAGGGACAGTTCGGGTAAAAATGGGCTTGGGAAGCAAACGGACTATCGTTTAAGGGATGAGCATACAGATAAGTGATCCCAAAAGAACATACAAAGCTGATCTCAAGGGCGAGGAACTCGTAGATGCCAGTGGATCATCATTACTCCAAATTTCAAACCAAGCCCAAGACTTGGGGTTTCTATTTGAACACATTCTGAGCAGGTTATTGGCACAGACTCAAGGGTCAATCATGGCAGGGGGCAGCTAATCAGATGTTTGTTCCCAGGCCTCTACAACCAGTCATGGGAAGACTGAGGCTTAAGTGCTGTATTAGTCCGTTCTCATACCGCTATAACGAAATGAATGAGGCTGGGTCGTTTATAAAGAAAAGAGGTTTAATTGGCTCATGGTTCTGCAGGCTGTAAAGGAAGCATAGCAGCATCTGCTTCTGGGGAGGCCTCAGGGAACTTACAATCATGGCAGACGGCAAAGCAGAAGCAGGCACATCTCACATGGTGGGAACAGGAGAAAGAGAGGGAGGAGGTGCGACACTGTTTCAAAAACCAGATCTCATGAGAACTCACCACTCACTGTAGAGTACCAAGAGAGATGGTGCTAAAACATTCATGACAACTCCACCCCCATGAGCCAATCGCCTCCCACTAGGCCTTCCCTCCCACACTGGGAACTACAACTCAACATGAGATTTGGTGGGGACACACATCCAAATCATATCAAGAGCTGAAGATCCAGTCCTTGTGTTGACACTGCTGGGGAGCAGACTTTGGGAAGTAAGGGGTCACCAAGGAATAAGGCAAGAAATCAGTTACTTGGAAATTACGATGCCAAGGTCAGAGCAGGATTAACTGTACAAGCAGGAGTTAGAAGAGTCATATAGAGATGCTTCAGAAAAAACATTATAATTATTATAAATATAATACTGTTATAATAATAAGACAGATGATAGGAATTCTAGATGACTGTTTTTTGATATAAAAGCCAAAAAAATCAGAATTCAGTAGATTAAAACAATATTTTTCATATATTAATTACAAGCATGAAGAAGAAAAAGGGGAAATAAAATATAAACACAGTTCAATTGTTCTTTATATTTTAGCATATAGGGAGATAGTACTGGAGAGGCTACTAAGAACAGATACTCAATAAATAAAATATATAACATAAAAATTCCAATAAAGTATAGTGTTTTATATATATATAATATGGTATAAAATATATAAGAACTTGTTCACCTCAAAGTTTATGTTTTTGGTGTCCTTAAATTGAAAACAATTAAATATTCATACATATAATCTGTAGAAATATAAATCTTTTCTTCTTATTTACAAGTTACTTTATTATTACTAAATTAGTTATTTTCTGAATTCTAATTTATCTGATGGTAGAAAACACCCAATTACATACAACCTAGCAATTTGTGCAAACAATGCACTAGGCACATGATTTTCTACAGCATACTATTAAGCTGTATCTTTTTTTAAAGAATTTGGGTGCTAGCGGATTATGAATTAAAAGGTTACTGTGTCAAATTCACATTAACTGGTGGCAAGAACAAAAATCTGGCGTCACCACCGCCGTTCACTTGACAACACCACTGGCTCCAGCATCTCCCCTTCTTCAGGAGCCCCCAGTCTGCATGTGAGTGTCTTGAGGCAGGTTACAAAGTGGCCTAAGGTGTTGACTCTGGAGTTTGATTTCAAAGTCCAGCTGCCCATCTTGCTAGCTGTGGCCTTTGGGGACATTACATAACCTCTGTGTGTCCCATATTCCCCATCTGAAGAATGAGAATAAGAATGCTGTGTATTTGTTGTAAGGATTAAAATATATTCAAATGAGTGAAAATATTTTGGCCAGGTGCCATGAATCATGCCTGTAATCCCTGCACTTTGAGAGGCCGAGGTGGGAGGAACACTTGAGGCCAGGATTTCAAGAACAGCCTGGGCAACATAGTGAGACTCTAACACTATAAAAAAAAAATTGCCAGGCTTGGTGGTGCATGCATGCAGGCCCAGCTACTCAGGAGGCTGAGGCAGGAGGATTGCAGAAGTTTGGGGCTGCAGTGAGCTGACTGTGCCACTGCACTACAACCTGCCTGGGTAACAGAGTGAGACCCGTCTCAAATAAATAAATAAACAAAATAAAATGAGTTAATATATTTAACATCGTAGAGCAAAAGAAGTACTCAGTGAATGCCAGCTATCTATGGACATTATTATAGCCTTGTTTTCAAGGAAGAAAGCCTACTCACTCTACCCTACAAGAGTATCGCATTCTCTCAATATTAATTTAATTGCACATTTAAAAATAACAAAGAGAGCAAAATTGGATTGTTTGTAACACAAAGGATAAATGCTTGAAGGGATGGACACCTCATTTTCCATGATGTGATTATTATGCATTGCATGCCTTTATCAAAATATCACATGTACCCCAACAAATACATACACCTACTATGTACCCACCTTCCTTTATCCTTTTTTTTTTTTCCTTATGTTGCCTGGGGGTGAAGATGGCGGTAGCAGGGCCAGTTCTCGCATATCCCAACATGCTCTGGGGAGTGGCAGCTGACCTCTGTTGCTTACCTCTTTTTGTGTTTAGAATGTGGGGTACTTTGTGCCTTTGGTTCTCAGCTTTGTGCCTCAGCCACCATCCTGAGACAAGAGGAAAAAGCCCATTTGGCAGGCTGTCATGTCACTTTATGAGCTTAAACATTCAGCCTTCCAACATGGCTTACTTTCTGCATGATCAGAGAAAGGACACACATAACCCAGTTTAATACAGTGTTTGTCAAAACAGAAGGCAGGATGCCTTGGCCTCTGTCTAGTATTATGTAAATATTCAAAATTCTTTTTCTTTTTTAAAAAAAAAACTCCCATGAACACAAAGCTCTTTAACCTTGCCTTTCTTCTACCTATTCTCCAGGGAGTTGAGTGGGTCAGAACATTTTGAAAATCATCGTTTTAAATATCAAGTTCATATTTTAAATTCTACATTTTTCATACTTTCTGCTGTTACGATTTAAGTCTCATTTCCCAAAGCAGGCTTCTTAACTTGTTAGCTATAAGCAAATTGAACTACTGGTGCTTTTTTGCTTTTTTAATGTTTATTTATTTGTTGGGGGTTTTGTTGTTGTGTTACTGTTTATTTCAGTTAAAAGCTTTTCTTAAGTTGTGTTTGGCATTTTCTTCTGGGGAGAAGGAAAATTTCAAAAACAAGACCAAAGAAATAACAAACTCGCAGTTAGCATAAAATAATAACAAGTAGAAAATTTTGGCTGAAACCTCTATATTCACTAAGTTTTCCAGAGGCAAATGTTATAGCTAATCACTTCCATATTTGCCTGGAAAATAGTTTGATCCTTGTGAGTCTTTAGTATTCAGCTCTTTGGTAGGAAATTTAATGTAAGCAAAAAGCTTCTTTCCAAATAGGGCTAAAATCTGCTTACTTTAATAAAAGTGTTGTACTATATACTTGACTACAAGATGTAAACTTTATAACAACATTGAACTAATTTTAGATAATCATTTTCTCATTGTTTTGCTTCTTGTTTAATTGCCAAAACAGGATCCTTTTTATAATTTAGCATGTATATGAACGCATGTGCTTCTGAATCTTGAAAATAAATATATGAATAAAGCCTAAATCATTACAAAGGTAAACATCTCACCAAAGCAGGAGTATATGGTTGGTCCCAACCATGTGAAGGCTTTATAAAATGACTAAGGTTCTTTCTTTTCTTTTCTCTTCTGATGTCTATGGCCTATTCACCTACTTAATGTGCAATATATTTTATCTGTAACAAAACAAGAGAGTTGTAAATTTGGCAATCTAGTATCAAAACAATGAACATTTGTTTTTAAATCTTTAAACATCTTTAAAATATGCTACAAGAATGGAATTATCCAATAAGAAAAAAATTTTTTGTTAAGGAAATTAACAAAGCGATAAGGGTAAAAGTGAAAGTTGATGATGTTATAGTATTTTTATTCAAATGTTTGTAGACGGCTCTTCTTGAGATTGTTTATAGTGACCACTACTTCAATCATCCTAAAACCTAGCTTTCTATGCATCTGAACAATAGAGAGGTCCCCATTTGCCACGTTCTCTAAGTCTGTACAGATCAACCTAGGTGAGACCCAATGGGTATTAATTTACATCACCCTCAAGTGGCTTAAGGAACAGACATCACCATTTGGCAGGGTGTGGTGGCTCACACCTGTCATCCTTTCACTTTGGAGGCCGAGGCGGGCGGATGGCCTGACCTCAGGAGTTTGAGACCAGTCTGGCCAACATGGCAAAATCCAGTCTGTACTAAAAATACAAAAAAATTAGCCAGGTGTGTAGGTGCGTGGCTGTGATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCCGAAATAGCACCATTGCACTCCAGCCTGGGCGAAAGAGCAAGACTCTGTCTCAAAGGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGATATCACTTTTTGGTGACAAAGGGGTAGCTACATTTGCTTCAGTGTTCAAAGAAATACCACAGCAAAAAAGAATTAAGGGATGAAAAGAATAGCAGAAGCTTGCAGTTTTTAGCAAAAACATCTAAGAATGTATGGACTTTTAGAAACTTCAGTGGGTTAGTAAAAAATCTAATAAGGCTAAGAGATTATAAGATTTTGACAAGATTATGGGTGCAGCACACCAACATGGCACACATATACATATGTAACAAACCTGCATGTTGTGCACATGTACCCTAGAACTTAAAGTATAATAATAAAGATTTTTACAAGATTACTATTTTGGGTTCATTTTCAGATGTCCAGAATGATTTATCATGCTCTAAGTCAGGATAACCTGTAGTAACTTTGGTGTTAACATTTCTGCTTTCATTTTAGCTTCATGGGTGAGATAAATTTTACTATTCCGTCTGATAAAACTGTAAGTTCCACCTAAATATACTGTTATTAACAGACTACTCATAACTTGTTTTTTTTAAGATTGTTTTCTACAAAACTCAGAAATTAGAAACTAAGCTCACACCTGTAATCCCAGCCCTTTGGGAGTCTGTGGTGGGAGGATAGGATTGTTTGAAGCCAGGAGTTCGAGACCAGCCTGGGCAATATAGTGACACGCCCCCATTTCTTAAAAAAAATGTAAAAGAAAAAAGAAGAAAGAAACAAAAAACTAGATTCTTATTTCACTCCCCTTTTTTCCTCGATGATTATATCAAGGATTCAGGTGGCAAATTTTAGCAAAGGAAATAAAACTTTCCTAATATCCACTGGAAGATGTACAAGATGCAATTTTAAAACGCTGATTTCTATACCATGTGTTATCTGTCTCCAGTGATACTGAGTAGTCTCATTCAGAGGCTCCCTAAGGCGGGGGGAGAAAAAGACACATAATGAATGTTACATTACCTTGTTTTAAAAACAG
Seq C2 exon
ATTGTTCAGAGATTTTCAATGATGGGTATAAGCTCAGTGGATTTTACAAAATCAAACCTCTCCAGAGCCCAGCAGAATTTTCTGTTTATTGTGACATGTCCGATGGAGGAGGATGGACTGTAATTCAGAGACGATCTGATGGCAGTGAAAACTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104760:ENST00000381840:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(1.3=4.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains