HsaINT1017534 @ hg38
Intron Retention
Gene
ENSG00000213160 | KLHL23
Description
kelch like family member 23 [Source:HGNC Symbol;Acc:HGNC:27506]
Coordinates
chr2:169733846-169736227:+
Coord C1 exon
chr2:169733846-169734087
Coord A exon
chr2:169734088-169735012
Coord C2 exon
chr2:169735013-169736227
Length
925 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTATTTCATATTTATTGCAGCCA
3' ss Score
7.05
Exon sequences
Seq C1 exon
ACGGCCCGGCGACGGGGGAGTTCCCGCGAGTGGCCTCGCGCCCAGACCGTGCGGGGGGCTGTTCGGGTGGAGGCGGGGGAGCCGCCGGGACACCAAAATAGGAGCTGCTTGTGGGGTGGAGCGGCACTAGCTGGCGGCTTCCGAGCGCCTCTTCCAAAGATGGTCAGAGGGGCCGGAGGCGTCCCCGCTCCCGCTCGCTACTAGCCCGCGGGCCAGCGCCGCGTCCCGAGCCCCGGCGGGAG
Seq A exon
GTAGGTGCGGTGTGGACCCGCAGCCCGAGGCCGGCCTGCTGGGAGCGAGCGGGGCCGGGCGCGGGGAGCGGGGCCGGGCGCGGGCAGCGGGGCCGGGCGCGGGCAGCGAGGCCGCGCGGGAGAGGAGCGCAGACAATGGCCGCGCGGGCGCCGGGCCGGGCCGAACGCGTTGCGCTGGGGCTGCCTGCGGCGTCCTTCCCACACCTGCGCGGAGCGCCGGGCAGAGGGACGCGGGCACCGGGCCCGCGGGCGGCACGCGGCGCCCTCGAGTCCAGCCCCGCTCCTGGCCCCGGGGCGGGGCGGTCTCCGGGCGGGAACGTGGGCCGGGGCCCAGGCGCGGGGCGCGCGGAAACCCCTGCGGCGGGCGCGGGGGAGGGGGCGAGGGCTGCAAGGGCTGCGCCGAGCTGCCTTCCTTTCTCTCCTTCCTTAAGCGAAAGGGCTCGGGATTTCCCTTTTCCGAGACCTCTTCTTGTCCATTTATATTTCCATCATCCCTTTCTTGGCATTTCGATGTGATTTGAAAGGGAGACGAGCTTGGGGAAAAGGTTGAATTGGGGCCGAGCCGAGACAGCTGAGGTCCGGCCTCGAGTGGGGTGACCCTCGGACACTTGCCTTGCCTAGTGTGGGATCTCATCTCCGAACGCCAGGCCAGGGTAGATTGCGGTGAATGGAATAGCAAATCAGTACTCTCAAAAGGACTACTGAAAAATCCAGGAGCCTCATTTCAAGCTCCGAGCTACCCTGAATTTAAATTGACCACCATATAAATGATCAAACAGTCCATCCACATTTTGCATTTATTATTTAGATGCTGAACTTAGTCCAGTTTTGGAGTATATCCGATGATAGTCAAGTTATTTAGCGTTGATTATTTGAGAGAATGTGCAACATTGAAAACACATTTGTTATTTCATATTTATTGCAG
Seq C2 exon
CCATGGCTCTAAAAGGACAAGAAGATTATATTTATCTTTTCAAGGATTCAACACATCCAGTGGATTTTCTGGATGCATTCAGAACATTTTACTTGGATGGATTATTTACTGATATTACTCTTCAGTGTCCTTCAGGCATAATTTTCCATTGTCACCGAGCCGTTTTAGCTGCTTGCAGCAATTATTTTAAGGCAATGTTCACAGCTGACATGAAAGAAAAATTTAAAAATAAAATAAAACTCTCTGGCATCCACCATGATATTCTGGAAGGCCTTGTAAATTATGCATACACTTCCCAAATTGAAATAACTAAAAGAAATGTTCAAAGCCTGCTTGAGGCAGCGGATCTGCTACAGTTCCTTTCAGTAAAGAAGGCTTGTGAGCGGTTTTTGGTAAGGCACTTGGATATTGATAATTGTATTGGAATGCACTCCTTTGCAGAATTTCATGTGTGTCCAGAACTAGAGAAGGAATCTCGAAGAATTCTATGTTCAAAGTTTAAGGAAGTGTGGCAACAAGAAGAATTTCTGGAAATCAGCCTTGAAAAGTTTCTCTTTATCTTGTCCAGAAAGAATCTCAGTGTTTGGAAAGAAGAAGCTATCATAGAGCCAGTTATTAAGTGGACTGCTCATGATGTAGAAAATCGAATTGAATGCCTCTATAATCTACTGAGCTATATCAACATTGATATAGATCCAGTGTACTTAAAAACAGCCTTAGGCCTTCAAAGAAGCTGCCTGCTCACCGAAAATAAGATCCGCTCCCTAATATACAATGCCTTGAATCCCATGCATAAAGAGATTTCCCAGAGGTCCACAGCCACAATGTATATAATTGGAGGCTATTACTGGCATCCTTTATCAGAGGTTCACATATGGGATCCTTTGACAAATGTTTGGATTCAGGGAGCAGAAATACCAGATTATACCAGGGAGAGCTATGGTGTTACATGTTTAGGACCCAACATTTATGTAACTGGGGGCTACAGGACGGATAACATAGAAGCTCTTGACACAGTGTGGATCTATAACAGTGAAAGTGATGAATGGACAGAAGGTTTGCCAATGCTCAATGCCAGGTATTACCACTGTGCAGTCACCTTGGGTGGCTGTGTCTATGCTTTAGGTGGTTACAGAAAAGGGGCTCCAGCAGAAGAGGCTGAGTTCTATGATCCTTTAAAAGAGAAATGGATTCCTATTGCAAACATGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213160:ENST00000392647:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=26.9),PF0770710=BACK=WD(100=25.2),PF0134420=Kelch_1=WD(100=8.1),PF0134420=Kelch_1=WD(100=11.6),PF0134420=Kelch_1=WD(100=11.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGGAGCTGCTTGTGGGGT
R:
TGTCAGCTGTGAACATTGCCT
Band lengths:
356-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains