MmuINT0087882 @ mm10
Intron Retention
Gene
ENSMUSG00000042155 | Klhl23
Description
kelch-like 23 [Source:MGI Symbol;Acc:MGI:2683536]
Coordinates
chr2:69822370-69825000:+
Coord C1 exon
chr2:69822370-69822642
Coord A exon
chr2:69822643-69823786
Coord C2 exon
chr2:69823787-69825000
Length
1144 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CGTGTTTGTATTTTTTGCAGCAT
3' ss Score
9.01
Exon sequences
Seq C1 exon
AGTAACTCGAGAATCTTAGGTGCCTGGATTCAGCCTTGACCTAGGCTACCCCCACTTTCCCTGGAAGCTTCCAGGTTAACTCCTAGTGTGCTTAAGCAGCCCCAAAGCTCCTTCCTGCGCGCTCTGCTGGAGGCAGCATGGAGTTTATGGGAAAGCAGCTACTTGTGGCATTTGAAGGCAGCCCTAATAGAAGACCGTAGTTTCGCCTTCTTCTCTCGGCACTTTCTCTCTCCCCGCACGCCAAGGGCCAGGGCCGGCAAGAGGACAGAGAAG
Seq A exon
GTAAGGGTACACACTCCCCTCCGGCGTTGGCTGGGGACTCCGGCTTTCTCCTAGCAGGCAGTGCGATGGGCGTGCGCGCGCGAGAGGAGCGGGGCTGACCGTGGACGCGGCCCACCTGCTGCGGGAGCCCACGCTGCGGCGCCCGGGCTGCGGGGGGCTGCGGGCGGAGGCGGGAAGCCGCGGGCCACCGAAGCCGGAGCGGCTCGTGGGCTGGAGCTGCGCTAGCAGGCGGCCTCCGCCGCGCCCCGCCGCGCGCTACCAAAGATGGTCAGAGGGTCGGGAGGCGCCCCCGCCCCCGCCCCCGCCGGCCGCTAGTCCGGAGTCTGCGTTCCGCGCCGCCAGCGAGGTAGGTCGGAGCCCGGCGGCCCGGGGCCGGCCAGAGAGGCGAACGGGCAGCGCGGGAGACGAGGCCCCGCCACCCCCAGCCCACGCGCGCCGGGGCGCAGACAATGGCCGTGCGGTGCGGGCCCAGTGGCGAGGGCGGGCGCGTGGGTGCCGCGGGGCCGTCCACACCTGCGCACCCGGCCGGGCAGAGGCCGCGGGCATCGGCCAACGGCGGCGCGCGACGCCCGGGAGCCGAACCCCCGCGCCGGGCCCCGGGGCGGGGCGCTCTCCCGGCGGGAACGCCGGCCGGGCCCAGGCGCTAGCGCGGGCTGCAGAAGCTAGCTCGGGCCCGGCCGCTCTTGTGCTGTCAGCAAGCTGCAGAGCGCAGGGATCCCTTTTCTGAGATTCTCTCCATCTTGGTGGCATCTCAGTGTGAATTGAAATCGAGGGGGGAGGGGGAGAACCAACAACGGCGAATTGGGGCCGGGCTGCGGCGGGGTGACCCCCTCGGACACTTGGCCTGGGGACTCTCAGGAACTGCCAGACTGGGACAGTGCAGATACTGGGTGGCTGGGGGTAGTAAGCTAGGATCTCTCAACAAATGGATAACTGGAAAAAAAAAATCCTCATTTAGTTAATCTGATTTTAAATAGACCATCGTATAAATAGTTCAGCGCATTTTGCATATGGTGTTTGGGCATCTGATTTTAGTCTAGTTTTGGAATATGCCTGATGCCATCCATGTCTGGTGATCGGAATTTTTAACATTAATTATTAGAGTTAATACACAAAGCTGAAAACGTGTTTGTATTTTTTGCAG
Seq C2 exon
CATGGCTCTAAAAGGACAAGAAGATTACATTTTTCATTTCAAGGATTCGTCGCATCCAGTGGATTTTCTGGATGCATTCAGAACGTTTTACATGGATGGACTATTTACTGATATTACCCTTCAGTGTCCTTCAGGCATAATCTTCCATTGTCACCGAGCTGTTTTAGCTGCCTGCAGCAATTATTTTAAGGCAATGTTCACAGCTGACATGAAAGAAAAATTTAAAAGTAAAATAAAACTGTCGGGCATCCACCATGATATTTTGGAAGGCCTTGTAAATTATGCATATACTTCTCAAATTGAAATTACTAAGAGAAATGTACAGAGCCTTCTTGAAGCAGCGGATCTGCTGCAGTTTCTTTCTGTAAAGAAGGCGTGTGAGCAGTTTCTGGTCAGGCACCTGGACATTGATAACTGTATCGGGATGCACTCTTTTGCAGAATTCCATGTGTGCTCAGAACTAGAGAAGGAATCCCGCAGGATCCTCTGCTCCAGGTTTAAGGAAGTTTGGCAGCAAGAAGAATTTCTGGAAATCAGCCTTGAAAAGTTTCTCTTTATCTTGTCCAGAAAGAATCTGAGTGTCTGGAAGGAAGAGGCTATCTTAGAGCCGGTCATTAAGTGGACTGCTCACGATGTAGAGAATCGAATCGAATGCATCTACAACCTGCTAAGCTATATCAACATAGACATAGACCCAGTGTACTTAAAGACGGCTCTAGGCCTTCAAAGAAGCTGCCTGCTAACTGAAAATAAGATACGTTCCCTAATATACAATGCCTTGAATCCCATGCATAAAGAGATTTCCCAGAGGTCCACAGCCACCATGTATATCATTGGAGGCTACTACTGGCATCCTTTATCAGAGGTCCACATATGGGACCCTTTGACAAATGTTTGGATTCAGGGAGCAGAAATACCAGATTATACCAGGGAGAGTTACGGTGTTACCTGCTTAGGACCTAACATTTATGTGACTGGCGGGTACAGGACAGATAATATAGATGCTCTTGACACAGTGTGGATCTATAACAGTGAGGGAGATGAGTGGACAGAAGGCCTGCCCATGCTCAATGCCAGGTATTACCACTGTGCAGTCACCTTGGGGGGCTGTGTCTACGCACTAGGTGGTTACAGGAAAGGGGCTCCTGCCGAAGAGGCCGAGTTCTATGATCCTCTGAAAGAGAAGTGGCTTCCTATCGCAAACATGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042155:ENSMUST00000053087:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=26.9),PF0770710=BACK=WD(100=25.2),PF0134420=Kelch_1=WD(100=8.1),PF0134420=Kelch_1=WD(100=11.6),PF0134420=Kelch_1=WD(100=11.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAAGCAGCCCCAAAGCTCC
R:
ACAGCTCGGTGACAATGGAAG
Band lengths:
345-1489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types