RnoINT0080040 @ rn6
Intron Retention
Gene
ENSRNOG00000007981 | Klhl23
Description
kelch-like family member 23 [Source:RGD Symbol;Acc:1307166]
Coordinates
chr3:56057043-56060090:+
Coord C1 exon
chr3:56057043-56057157
Coord A exon
chr3:56057158-56058875
Coord C2 exon
chr3:56058876-56060090
Length
1718 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTGTTTATATTTATTACAGCCA
3' ss Score
6.82
Exon sequences
Seq C1 exon
AAGTGGGGCTAGAAACCCAAGTTGGCTTCCTGGTTGTTCTGGTGCAGTTTCAGCAGAGGTTGTGGCTTGGCTCTCTGCGCTTCTTAGGTGTTTCAGAGCTCTCCTACCATGTAAG
Seq A exon
GTATGGCCATTATGTATCTGTATACTCTTTCACTCTGACACTATTCTAAGAACAATCTTAGCTCTCCCGTACTGGTCTGTCGTGACCTCCTTCCAGTAAGCTCTGTGACAGCCACGGACCATCTTTCAAACCTAATTACCGCTTCCTGACTTATGAGGTGCTCCTAAGCTACTCAAAATCTTGCTGCTAAAAACATCTGATACTAGCTTTTGTTGTAATAAGAAAGTGGACTTTCTGGTGTGGCACAATGGACATCACTAGAAGGCTGGAGATTACCCCTTCCAGCCGCTTGTGTTCTAACACAGTAACTCGGAGTCTTAGGTGCCTGGACTGAGCCTTGACCCAGGCTACCCCCACTTTTCCTGGAAGCTTCCAGGTTAACTCCTGGTGTGCTAAGCAGCCCCAAGGCTCCTTCCTGCGCGCTCTGCTGGAGGCAGCATGGAGTTTGTGGGAAAGCGGCTACTTGTGGCATTTGAAGGCAGCCCTAATAGAAGACCTTAGTTTCGCCTTCTTCTCTCGGCACTTTCTCTCTCCCCGCACCCCACGGGCCTGGGCCGGCAAGAGGTCTCGAGGGACAGAGAAGGTAAGGGTACACACTCCTCTACGGCGTTGACCGGGGACTCGGGCTTTCTCCAGGAGCAGGCGGTGCGATGGGCGTGCGCGCGCGAGCGGAGCAGGGCTGACCCGTGGCCGCGGCCCACCTGCTGCGGGAGCCCACGCTGGGGCGCCCGGGCTGCGGGGGGCTGCGGGCCGAGGCAGGGAGTCGCGGGCCACCGAAGCCGGAGCGGCTCGTGGGCTAGAGCTGTACTCGCAGGCGGCCTCCGCCGCACCCCGCCGCGCGCTACCAAAGATGGTCAGAGGGTCGGGAGGCGCCCCCGCCCCCGCCCCCGCCGGCCGCTAGTCGGGGTCCGCGTTCCGTGCCACCAGCGAGGTAGGTCGGAGCCCAGCGGCCCGGGGCCGGCGGGAGGGGCGAATGGGCCGCGAGGGGGACGAGGCCGCGCCGCCCCCCGCCCGGGCGAGCCGGGGCGCAGACAATGGCCGTGCGGTGCGGGCCTGGTGAGGAGGGAGGGCGAGTGGGCGCTGCGGGGCAGTCCACACCTGCGCAACGGGCCGGGCAGAGGCCGCGGGCACCGGCCAACGGCGGCGCGCGACGCCCCGGAGCCGAACCCCCGCGCCGGGCCCCGGGGCGGGGCGCTCGCCCGGCGGGAACGCGGGCCGGGCCCAGGCGCTAGCGCGGGCTGCTGCACAAGCTAGCTCGGGCCCAGCCGCTCTTGCGCTGTCAGCAAGCGGCAGGGTGCAGGGATCCCTTTTCTGAGATTCTCTCCATCTTGTTGGCATCTCAGTGTGTTTTGAAACCGGAGGGGGAGGGAGAGAACCAACAACGCTGAATTGGGGCCGGTGATCCCCTCGGACACTTAACCTGTGGCCTCTCAGGGTCTGCCAGTCTGGAACAGTGCAGATTCTGGGTGACTGGGGGTAGCAAGCTAGCGTCTCTTAACAAATGGATAACTGAAAAACCCTCATTTAGTTATCCTGAATTTAAATAGACCTTCGTATAAATAGTTGAGCGCGTTTTGCATATGGTGTTTGGGCGGTTGATTTTAATCTGGTTTTGGAATATGCCAGATGCCATCCATGTCTGATGATTGGTATATTTAGCATTAATTATTAGGGTTAATACAAAAAGCTGAAAACGTGTTTGTTTATATTTATTACAG
Seq C2 exon
CCATGGCTCTAAAAGGACAAGAAGATTACATTTATCTTTTCAAGGATTCGTCGCATCCAGTGGATTTTCTGGATGCATTCAGAACATTTTACATGGATGGATTATTTACCGATATTACCCTTCAGTGTCCTTCAGGCATCATCTTCCATTGTCACCGAGCTGTTTTAGCTGCCTGCAGCAATTATTTTAAGGCAATGTTCACAGCTGACATGAAAGAAAAATTTAAAAGTAAAATAAAACTGTCCGGCATCCACCACGATATTTTGGAAGGCCTTGTAAATTATGCATACACTTCTCAAATTGAAATAACTAAAAGAAATGTGCAAAGCCTTCTTGAAGCAGCCGATCTGCTTCAGTTCCTTTCGGTAAAGAAGGCTTGCGAGCAGTTTCTGGTCAGGCACCTGGATATTGATAACTGTATCGGGATGCACTCTTTTGCAGAATTTCATGTGTGCTCTGAACTAGAAAAGGAGTCCCGAAGGATTCTCTGCTCCAGGTTCAAGGAAGTGTGGCAACAAGAAGAATTTCTGGAAATCAGCCTTGAAAAGTTCCTCTTTATCTTATCCAGAAAGAATCTCAGTGTCTGGAAGGAAGAAGCTATCCTAGAGCCGGTCATTAAGTGGACTGCTCATGACGTAGAGAACCGAGTTGAATGTCTCTACAACCTGCTAAGCTATGTCAACATAGACATAGACCCAGTGTATTTAAAGACAGCTTTAGGTCTTCAAAGAAGCTGTCTACTGACTGAAAATAAGATACGTTCCCTAATATACAACGCCCTGAATCCCATGCATAAAGAGATTTCCCAGCGGTCCACAGCCACCATGTATATCATTGGAGGCTACTACTGGCACCCTTTGTCAGAGGTCCACATATGGGATCCTTTGACAAATGTTTGGATTCAGGGAGCAGAAATACCAGATTATACCAGGGAGAGTTACGGTGTTACATGCCTAGGACCCAACATTTATGTAACCGGAGGGTATAGAACAGATAACATAGATGCCCTAGACACAGTGTGGATCTATAACAGCGAAGGGGACGAGTGGACGGAAGGCCTGCCCATGCTCAACGCCAGGTATTACCACTGTGCAGTCACCTTGGGCGGCTGTGTCTACGCACTAGGCGGGTACAGAAAAGGCGCTCCCGCGGAAGAGGCTGAGTTCTACGATCCTCTGAAAGAGAAGTGGCTTCCCATCGCAAACATGATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007981:ENSRNOT00000010508:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=26.9),PF0770710=BACK=WD(100=25.2),PF0134420=Kelch_1=WD(100=8.1),PF0134420=Kelch_1=WD(100=11.6),PF0134420=Kelch_1=WD(100=11.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTTGTTCTGGTGCAGTT
R:
AAATATCGTGGTGGATGCCGG
Band lengths:
351-2069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]