HsaINT1018241 @ hg38
Intron Retention
Gene
ENSG00000050405 | LIMA1
Description
LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:HGNC:24636]
Coordinates
chr12:50222021-50231710:-
Coord C1 exon
chr12:50231665-50231710
Coord A exon
chr12:50222486-50231664
Coord C2 exon
chr12:50222021-50222485
Length
9179 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TCTACTTCTTGTTCTTCTAGAAC
3' ss Score
9.99
Exon sequences
Seq C1 exon
GTACCAGAAAGCAGCTGAAGAAACAAACATGGAGAAGAAGAGAAGT
Seq A exon
GTAAGTATTCAGAAATTCCAGGGCATGTGGCACTTCTTGAGCAGAATTGTGTGGCCAAGCCACCTGCAGCCTCTGTGGGGCTTGGGTTCTATGTCAGCTGAGTGGACATTTGTGCCAGCTGGTGTGATCTCTGAGCCATTTGCTCAGGACAACTTGGCTTAGTGCAGGGAATCTTATTTTTTCACTGCTTTTCTCCTTTTGAACCACTTTTTCTTTCCTGTGTTGAGTGAAGGACAAGAGGCCAAATGCTTGCCTGAGGTTAGTAAAATGGCTTCTACTCAAATGAGAACACAGGGTTTCCTAGGTGGTCTTCCTTTTTTCCAAATCAGACAATCAGAACTTCTACATCTGTGCATTTAAATGGTAGTAGCTGTGCAGCTGTTGTCATCTTCTGGGTTTTTTGTTTAAAGCAAACTTCTTGACCCAATCTAGTTAGCAAGTTTCCTAGCTGCAGGATCTACCAAAGACAAAAACCTCCAGAATAAACTCTCTGCTTCTACCCGTTCTCTAGTCTCCGTGCTTGCTAACTTCCGGTGAGGCTGAATAATACATGTCTTTTGAAATTTTACTTGATTTAATCTTGTGAGGAAAAAAACTCATATGTTTGGTCAATAATTCCTTAATTCGGATGGCATTACAAAAACATCCTCCTGGCAGTTTTCAGTAGCTAACCTATTTAAATTAGTGCATAATATGTTCCTGTAAATTTGTTCTAAGGCTAAGGTCCTTGGCTTCATTTTCCTGTAATTAAAAAATGGGTCTCCTCTGGTGCATTATAAGAAAAAACTGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACCGAGGCGGGCAGATCACGAGGTCAAGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTGTACTAAAAATACAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCAACTGCACTCCAGCTTGACTCTGCAGTCAGCCAGAGCGAGACTCTGTCTCAAAAAAAAAGAAAAAGAAAAAAAGAAAAAACTACCATTACTTTACTCAACTGCTGGTTTCTTTTCTTCCTTCCCTCTTGCCTCTGTTTTTCCCCCAACTTGCTCCTTTCTTTCTTCCTTCCCTTCACTGTCATCCATTTAACAAGTTTTCACTGAGCACCTACTACATGCCAAGCACAGACTACATCCCAGCCCTCGTGGAATTTACATTCTAGTGCAAAAGACAGACAATAAAGAAATTGTGTCAGTATGGCTGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACCTGAAGTTAGGAGTTGGGAGACCAACCTGGCCAAGATGGTGAAACCTTGTCTCCACTAAAAATACAAAAATTAGCTGAGTGTGTTGGCACATGCCTGTAGTCCCAGCTACTCTGGAGGCTGAGCCAGGAGAATCACTTGAACCCGGGAGGCAGAGATTGCAGTAAGCCGAGATAGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGACCCCGTCTCAAAAAAAATAAAAAAATTTAAAAAAGAAATTGTGTCAGTAGTGATTAGTGCTGTGGAACAGCATGAGGCAGGTAAGGAGGATAGAGTCTAGGGTGGTCAATGAAGGCCTGTGGTGAGGAAACGTTTGAGCAGAGATTTGAAGACATGAGCCAGGGAGAAGAGTCAGGCAGAAGGAACCGCTTGTGCGGATGTCCTCAGGCAAGAACAGTCTTGGTGTGTTTGAGGAATAGAAGAGAAAGGTCAAATGGTGTCATTGTAAAGACCTGGGCTTTAACTCTGAATGCAAGGAGGCCTTTGGAGAGGGTTTATATGCAAAGGAGTGATGTGGTCTGACTTAAATTTTTTTTTCTTTTTTTATTATTATACTTTAAGTTCTAGGGTACATGTGCACAACATGCAGGTTTGTTACATATGTATACATGTGCCATGTTGGTGTGCTGCACCCATTAACTCGTCATTTACATTAGGTATATCTCCTAATGCTATCCCTCCCCGCTCTCCCCACCCCACAACAGGCCCCCGTGTGTGTGATGTTCCCCTTCCTGTGTCCAAGTGTTCTCATTGTTCAATTCCCACCTGTGAGTAAGAACATGCGGTGTTTGGTTTTTTGTCCTTGCGATAGTTTGCTGAGAATGATGGTTTCCAGCTTCATCCATGTCCCTGCAAAGGACATGAACTCATCCTTTTTTATGGCTGAAGAGAAGGCTCTAATCCCAGCACTTTAGGAGGCCAAGGCGGGAGGATCGCAGGAGGCCGAGGTGGGAGGATTGCTTGAGGCCAGGAGTTCAAGACTAGCCTGGGCAACCTAGTGAGACCCTGTATCTCTATTTTTTAAATGTAAAAAAATAGAAGGAAGAGAATGTAGAGGAACAATAATGGCAGGAGCATGGAGACCAATTAAGAGACAATTATAATGATTTAGGCCAGGTATAATATGGTTTGGACTAGAGTAGTAGCAGTATAGGTGTTGAGAAGTGGTCAGGATGTATGTTGAATGTAGAGAGAAAGAAGAATCAAGAATGGCAGCAGTGGCTCTGCCACAGTGGCTTGTGCCTGTAATCCCAGAACTTTGGGAGGTCAAGGCAGAAGGATCACTTGAGGTCAGGAGTTCAAGATCAGCCTGGGCAATATAGCAGACCCCATCTCTATTACAAAAAGTAAAAAATAAAAGAATAGCAACAATGTTTTTGGCCCAAACACAATTAAATTAAAATACCATTAATTGAGATGGGGAAGACTACAGTAAAAGCAGATTAGAGAGGGAGAAATAGTAGAAGCTCAGTTTTGCACATGTAAACTGTAACATGTTTTATTAAGACATCCAAATGGAAATGTCAGTAGGAACTTGGATACTATATAAAAATCTAGAATTGGAAGAGATCCCCGCTGCGGATAAAATGGACATGTGTCAAAGTGTCAGTGGTACTTAAAGCTATGAGGTGCATGATATAAGCTAGGAAGTGAGTGTAGACAGAGAAGTGGTCTCATGACTTAGCTCAGGGGCACCTTGGTGTTTAAAGGTTGGAGATATAAGGAGTAACCAGCAGAGGAAACAAGTGCCAGAAGCCGAGTGAAGAAAGTGTTTCTAGAAGGGGAGTTAACAGAATCAAACACACAGGTAAGCTGAGAATTGACCATCGGATTTGGCAACATGAAGGTCATTGGTCATCTTGTGTTGTTTGGGAGTGGTAGAATAGAGGCCTGAATTGGACTAGGTTCAAGACAGTGGGTTAAGAGAAGTTGACCCCACGAGTATAGACAATCATATGTGGAGCATCTCTTATGTTCCAGCTCCTGAAGACACAAGAAGAATAAGATGTATTCTCTACCTCCAAAGGGACTGTTTAGAATTTGGAAAATAGAATTACAACCCAGGTGTGATAAGTACCATATCAGGCCCGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCACGGTGGCGGGCGCCTGTAGTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGGAGGCGGAGCTTGCAGTGAGCCAAGACCGCGCCACTGCACTCCACACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAGAAAAAAAAAATTACCATATCAAATAAATACTCAGAGTGGGCTGGGGGAGAATTTAGGAGGGATCTGAACTGTGCTACATCTAGAAAGGCTTCCCAGAAGAGGCAGTGCCTGACTCAACCCTAAAGGACCAAGAGGAATTAGCTAAGCAGAGGCGACAGGGAGTGGCAGAATCTTTGTATTCTAGATGGAGGAAGCAGCACACGCACAGCATGAAGGCATAAGAGAACAGGCCTACTTGACAGATGAAAAGATGGTTGTCGCATTCACCAAGATAGACAATTCAAGAAAAGAAACAGGTTAGAGAGTGAGGAGTAAAGGGAAGACTTCGGGCCTGGCACGGTGGCTCACATCTGTAATCCCGGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCTTAGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCTTGGTGGCTCACGCCTGTAATCCCAGCTACTCGGGAGACTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGCTGTGGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAGAAAGTGAAGACTTCAACCTTAATCAAGAAGGAGTTTAAGATGCCTCTAGCACTTCCAGGTAGAATTGGTAGAAAAGGAGAGATGTCTATCTAGAGATAAGTTCTATAACTCTGTCTATATAGATACACAGTATACATCTATCTATGTATTTGTTGATACTATAATCTATATGGTGGGTGAAATCGGGATGAATAACATCATATACAGAGAATATGTAAAGTAAGCAAAGCAGAGGACCTAAGACAAAAACCCTGAGGGACCCCACCATATAAGGGAGGGACAGAGGAGGAGAAACCTGTAAAAAAAAAAAAAAAAGAAAAAGAATTACTAAATTATGAAACTGAGTAGTGGCCAGATAAATGAGAAGAAATCTTTTTTTTTTTTTTTCATATGGAATCTTGCTCTTTCGCCAGGCTGGAGTGCAGTGGCATGATCGCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATTACAGGCGCACGCCACCACGCCCACCTAATTTTTGTATTTGTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCTTGACCTTGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCCAGGACTACAGGTGTGAGCCACTGCGCCCAGTGAAATCTTTTTTTCATTATTGTTTTTTTCTACACCCTTCTTGCATCTCAAAATGGGAAGAAATCTAAGAAAAAGGGGTATCACAGAAAAGTTGGAAGCAATTTTTACCAGGGAGAGTGGTCAGTAATGTCAGATGCTATAGTGAGATAAAATAAAGCAGAAGCCTCCAGTGCTTTTAGCAGTTGAGGTAAGTGGACGTGAATAGGTATTTAAAGAAGAGGGTGGGCATGGTAGCTCACACCTGTGATCCCCACACTTTGGGAGGCCGAGGTGGGAGGATCACTTGAGCCTGGGAGTTTGAGCCTGGGCAACATAGTGAGAACCCTCTCTATAAAAATTTTAAAAATTTAGCTGGGCGTGGTGGCATGGGCCTGCGGTCCCAGATACTTGGGAGGCAGAGGTGGCAGGATCACTTGAGCCCAGGAGGTCAAGGCTGCAGTGAGCCGTGATCATGCCACTGCACTCTAGCATGGGCAATAGAGCAAGAACCTGTCTCAAAAATAAATAAGTAAATAAATAAATAAAATAGATAACAAAGAAGTAACAGTGTAAAAACATGCTTAGCCTCACTGATGATCAGATAAATGTAAATTAATAATGAGATATAAATTGTAATCTAAACAGTTGGCAAATAATTTTGAGCAATACATATATTCATCAGTGGGGGAATGGTAATTGCACATACAGTATAATATACTATATGGTTATTAAGATTTTGGCCAGGCATGGTGGCTTACACCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGTAGATCACCTGAGGTCAGGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAATAACACTAAAATTAGCCGGCATGGTAGTATGTTCCTGTAAGCCCAGCTACTTGAGAGGCTGAGGCAAGAGAACTGCTGGAAACTGGGAGGCAGAGGTTGCAGTGAACCAAGATCGTGCCACTACACTCTAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAGAAAAAAAGATTGAAGATTTCATGTATGGGCATGAAAAGATATCAAAAGCACATTAGGTGATTAAATGCAAAGTGTAGAACAGTAAGTACAGTATGATTTTGTACAAAAAAATACATATAGTGTACAAAATAGAAAAAAAGACAACATATATACCATATAAACTGTCAGGACTGGGTATCTAGGTTGGGAGAGGTGGGGAGTCAAGTAGGGAAAATGGCATGTATTACAGCATCTATTCATGTCGGGTACATATTTCTATATTGATTGAGAGTTTTTCCCCCAATAAGTTATTACTTTTTTAATTGAGAAAAATAATAAATTAAAAATAAGATAATGTTATGAACATTTTAAAGAGACAGTTGGGGCCAGGCGCAGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACCTGAGGCTGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCAGGTATGGTGGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCATGAGAATTGCTTGAATCCAGGAGGCCGAGGTTGCAGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGTGCAACAAGAGTGAACCTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATGCCAGGCATGCTGACATACACCTGTAGTCCTAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAAGTCAAACAGCTGCAGTGAGCTATGATTACACCACTGCATTTCAGCCTGGGTGACAGAGCGAGACCCCGTCTCTAAAAAAAAATTAAAATAGGATCATGCTGTCTTATAATTTGCTTTCTTCATTCAAAAGTATCCTATGAGCATCTTTTCATGTCAATAAGTATACTTTGATCACATGATAGGTATCTGAGAAAAACAGTGTCCAGTTACCAAGGCAAAGTGCCACTTTGATTGTCAGGGCTCCTGTGTGGTTACAGTAAGGGCAGGTGAAGTCAGAGACCTAGATGACTCATCCATTGTGTGGCACGAGACCTTACAGAGCCAAGAGTGCTGCTGGCAGTTAGGGTAGAACCAGCTTCTGGAGCTGTTCTGTAATTCCTTCTTTTCCAGCAAGAAAACTTTTTAAGCTTCTTATATCTCTGATGCATACATTCTTCCCCCAATGGATCATTTTGTAAGCTAAAATTTAAACACTAGAATCAAGCAGTTCTATAATTTCTTTTCAAGCCTTATTTCTACTTGATGAAGTGGCTTTCAAGAGTATATTCAGAAGAGTAATAGGGTGAGAGACTTAATTCCCAAAATAGCTGCTAATCCTGTTTAATTCCTAGGTTGTTTGTCCTTTCTTTCTTAGTTGAAAGACTGGTGAGTCACAGACTACAGGAGAGAAGGTATTGGAGTTTGCAGTTTGTTGGGAAGGTGGTGCTGTTCAATTTATTTAGGAGTACAGTCCTTTCAAAGTACGGGACATTTAATTTAATTTAATTTTTCTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCCGGACTGGAGTGCAGTGGCGCGATTTGGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCCATTTTTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCGTGCCACCACGCCCAGCTATTTTTTGTATTTTTAGTAGAGACGTGGTTTCACGGTGTTGGCCGGGCTGGCCACGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCGGGACATTTAATTTTCAACAAGCGTGTTTCCTCTATTATGGAACAACAGTGACAATTTCCAGGTTGTTTTCAGTCTGTCTTACATGTATAAATTAATTCCATTTTTGGCCCTAGTGAAAGTGAACTCTCTTAGATATGTAAATGTGTGTCCTTTGATCATCTGAGTGATAAGTAGTGGTATTTGCATTTGAAGCCTGCATATTTTACAACCAGAGGATCTGTAAAACAGTGAATTTCTTGATAACTGAGAATTTTTTTTTTTTTTTTGGTTGGGGGATGGCGTCTCACTTTGTCACCCAGGCTGGAGTGTAGTGGCGCAGTCTTGGCTCACTGCAACCTCCACTTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGACTATGGGTGTGCACCACTGCACCCAGTTAATTTTTGTATTTTTTTTAGAGACAGGGTTTCTCCATGTTGGTCTGGCTGGTCTCAAACTCCTGACCTTGTGATCCGCCGGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCCTGATAAGTGAGAATTTATACACAGATAAACTTGTAGAGAAGAGCAGGGAAAAAAAAAAGATTAAATTCTTATGAAAAATAAAATTTGACTGCTCATATGCATGTAAATTATGTCAGATATAACTAAATATTTATGCAAATACTTGGAAAGTCTGGGGACTTCTCCAGGGTTCTACAAATTGTTTCAATCCTTGCTGCCACTATCCGTAATTAATGGTATAGTTTCAGCTATCCTGCAACTATCCTGCATCTTTGTCTTATTTAAAAGAAGAAAAAAAAACCCAGCAGAATTTACCATGTTATTTTATGGCAGGTAATGATGAACTTTGCTGATGTGTAGTTACAGTGTTTCAAGCACTTGTATTTTGCTTTTTCTTTCTTGTTTTTTTCCCCATTAATCTTTGGGTAAAAATCTCTTGTTTCGCATGTAACTATCATTAGAGCTGGGTTTGCCTTTCTTCTCATTTTGTCCTTATAAGGCCATCCTGTTTTATCACTTCCTGCTTCAGCTCCTGAGTTTTTCTCTCTTCCCCTCTCCCTCTCCCTCTGCCGGGTGGATGCTTTCTCCATGTGGCAAGGCTGTAACTGTTCACAGCTGTCTGAAACAGCAGTGGACCAGGAGCAGCTTGGAGTTTTAACTTTCATTTTACAAAGAACAACATGTTTGAATGTTTCAGCAGGCAAGTTATAACTGGCATCTACTTCTTGTTCTTCTAG
Seq C2 exon
AACACCGAAAATCTCTCCCAGCACTTTAGAAAGGGGACCCTGACTGTGTTAAAGAAGAAGTGGGAGAACCCAGGGCTGGGAGCAGAGTCTCACACAGACTCTCTACGGAACAGCAGCACTGAGATTAGGCACAGAGCAGACCATCCTCCTGCTGAAGTGACAAGCCACGCTGCTTCTGGAGCCAAAGCTGACCAAGAAGAACAAATCCACCCCAGATCTAGACTCAGGTCACCTCCTGAAGCCCTCGTTCAGGGTCGATATCCCCACATCAAGGACGGTGAGGATCTTAAAGACCACTCAACAGAAAGTAAAAAAATGGAAAATTGTCTAGGAGAATCCAGGCATGAAGTAGAAAAATCAGAAATCAGTGAAAACACAGATGCTTCGGGCAAAATAGAGAAATATAATGTTCCGCTGAACAGGCTTAAGATGATGTTTGAGAAAGGTGAACCAACTCAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050405:ENST00000394943:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.736 A=NA C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains