MmuINT1022223 @ mm10
Intron Retention
Gene
ENSMUSG00000023022 | Lima1
Description
LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992]
Coordinates
chr15:99819494-99826837:-
Coord C1 exon
chr15:99826792-99826837
Coord A exon
chr15:99819959-99826791
Coord C2 exon
chr15:99819494-99819958
Length
6833 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTTACTTCTTGTTCCTCTAGAAC
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTACCAGAAGGCTGCTGAAGAAGCCAACATGGAAAGGAAGAAAAAT
Seq A exon
GTAAGTACTCAGAGGCCCCAGGGCATGTAGAGCTCAAGCAGTCTGCGTGGCCTAGCCACCTGCCCCTCAGTGGCGCTTGCGCTCCTCTCCGTGACAGCTGAGCTGGACGTTTGTGTCATTTGGTCTGATGGCAAGCCATTTGCTGGGAGAAGTTGGCTTAGGTGCAGGGAGTCTGAGTTTCAATGTTTTACTTTTGGGCGCCACTCCCAACCCCCCCCTTACTGTAACTAAGAAAAAAGGATGGAGGGCCAAATGCTTTGCTAAGCTTAATGAAGTGCCCACCAAAGGAGAGCAGGTGCCACCATCTCTGCCTCCAAATGGAAGAATCTGCCTTTGAAAGGAAACTCTGCAACTGTGTTTATCTGCCTGGTGCTTTGCTTGAAGCTGGCCCAGTCTGGTTAGTGTGTTTCCCAGCTGCCTGAGTGGGGGGGCGGGGGGGGGGTGTGCTCAAGCCCCCTGCCAGTCCATTCTCTCCCTGCTGTGACTTCCAGCTGGGCCAGATCCTTTGTCTTTTTCTAGGATGGAGTCTCACTCTGCACCCAGGCTGAGTTTGAACTCAGGGAGAGAAGTCCCTGGGCCTTAGCTCTGAAGGATTTAGTGTCAAAGGAGCGTAGCTTAGATGGGTGCCTAGCACTTGCCTGTTGGTTTGGTCTCTCTGGGGAGCAGTATTAACTGGGTCTCCAGCTTAATCTTCCTGTGATTTCAAAGTTGAGCTTCCTGGTGCATTAACAGGGGGAAAAAAAAAGCCTTTGATGGTGATGATTCATGCTAATAATCCTAGAACTCAGAAAGCTGAGGCAGGAGGATTGGTGTAAATTTAAGGCCTACCTGAGCGACATGAGTTCTAGACCAGCCTTGCTTGCAGTATAATACCCTGTCAAAAAACCAAAAATACAAAAACAGAATGAAAGAAAAAAGCACCATTAGCTGCTCTACAGCCGGCTGCTTTCGCCTTCTCTCTCGTCCCTATTTTTCCTTTTACCCATTTAATTAACACGTTTTTTGTAGGGCATCTATGTGCTAAGCACTGTTCTAGACATTAAAAATATGGACTACATCTTCTCAGGCATTTTCATTCAAGTGGAGGAAACAAGGACACACATGCACACACACACACACACACACACACACACACACACACACACACACACACACACGTCAGTTAGCAACTATTGGCTTAAAGCAGCAGAAAGGGTAAAGGGTAGTTTAGGTGTGGCCCTCTCTTGGGGGACTTAAGTAACCCAGAGCTGAGGTCATGAGCCAAGGAAAAAGTCAGACAGAAAGAACCATACATGTAAATGTCCCAAGGAGAAGTCATGTTGGACATTGGAGGACTAGAAAGAGAAAGGGCTTCAGAATCCTTGGGAAGGTTGGAGCTTTAGTCCAAAGAAAAACAGGCCTTTGGGGAAATGTGCGAAGGGCTGACGTGACCCAGCTTAAACTGCCAAGGAACAAAGGCAGAAGCAGGCAGAGCAACTCAGGACAGCGATGGGGATGCAGAGGCAGCCAGCAAGGCATGGAGATGCAGTCCCAGCATTGGGGAGGGGGCAGGAGGGTCAGAAGTTCAGGGTCATTCTTAGCTACATAGTGCGTTCAAGGCAGCCTGAGCTAGGAATTGAGGAACTGAATCTCAAAGATTTATTTATTATCATGTGTAAGTACACTGTCTTCAGACGCACCAGAAGAGGGCATCAGATCTCATTACGGATGGTCGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAGGCTGTCTTAAAAGAAAGGACTGTAATGATTTTGAAAAGATTGTGAATTGTACTGCAGCGGTAGTATTGTAGTGAGAACAGCCCGATCGAGATGTAATCAGCTCTGGATCTGTTTCATATATGGCTGGTCTTTCTGTCTGTCTGTCTATCTGTCTTCCTTCCTTTCTTTAATTTTCCAGTGTCTTATTATAGGGTTTTATGTGGCCTAGATTGGCTTTGAACTCATTATAGTCAGAATTAGCCCTGAACTCCACTGGAACTACAGGTATTCGCCACCACACAATCACCACCAGCTCTGAGGTACTTTCTTAAGATCAACAAGTGAATCAAGAACTGAGAGAGATGGCTCAGCAGTTAAGAGCACTGGCTGCTCTTCCAGAGGACCCAGGTTCAATTCCCAGCACCTACACGGTAGCTTACAGACAGATGTCTAACTCCAGTTCCAGTTCTAGCTAGTCTTGAAGTCACTCTGTAACCCAAGTAGGCCTTTAACTGGTAACCATCTGTGCCACCCCCCACCCCCCAGTAGCTGGGATTACAGGCCTGTGCCACCAAGCCTGGCCATGCTCATTTAATAATATCATCACTACTTTCCAGAAGCCTGCTGATGTCAAACGCTATATTGTATACATGAACAAAGGCTCAATATAAAGGGTACAGTAGCTACAGAATTTATAGTTTATAGAAATAGTCTATAATAGTTTATAGAAACTGGACAACTTGTCCAAAGTCACATGGCTGGATGGGGGTAGCGTATGCAGATAACACTCGTTACTTGTAGAGAATACAGAGAAGGAGGATGCAGGTTATCTATGTAAGCAGCTATCCGATCGACGGTCAAGCCAGGCCTCTCAGCCTAACGTTCCTTTCATTTTTGACTTTATTGATGATTTCTGTGGTGTAACTCTTCTCTTCCCTATCTCGGCTCGCCCCTAGTCCTAAAGACTGGGCCATGGCCTGGGTCTCACTCTCAGGGATGGTTTATGGGTGTGGGGTTTTTAATGACGGGTCAGCCCACACTGCCTTGGGCTTCTCCACATCTCTCTCAACACTCTTGAAGCTGCACCTTTAAGAGGCCATTTTTTTTAATGTGTTCTGATTGGGGAGGTGGGCTGAGTATGTGTGTGTAGATGTATGTTTGTTTGAATATGTTCACCTATGTGCACATGCGTGTTGTATATGTGCACACACGTGCCCATACATGTGAAGGCCAGAACACATTAGGTGCTGCTCCTGCTGGGGCCCCACCCACGTGGCACTCACCAGTTACACTAGCCTAGCTGGCCAGCGAGCCCAGGGACCTCCCTGTTTGACCTCCCCAGCACTGGGCTCACAAGTGTGCATCAATATGCTTGGCTTCCTGGGTTTTGTTTTTGTTACTGTTTTTTTTTTTTTTAATCTGTTTCTTAGATACAGTCTCACGCGTTAGCTAAAAGCATACCGTGACCTCTCTGTCTCCAGTGCTGGGTTTGCAGTCCTTCACTTCCTTTCTAGCAGGGGCACCTCTTTGCTTAATCAAATTCAGTTTTGAAAGAGGAACACATACTGAAATTAAGCAGACCCAAGTCTGCACACTGCTACAGAGATAGAATGACCATTCTGCGGCTGTGGAGCCTCACACTGGAGTTTACACTCTGACTATCAGATACATTCTTTTACACTTATGCACCACAAGAAAGAAAAACGATGATACAGTTAAGAACCAGAGGAGCAATTAACTTTCTATCACTCGTAAGCATTGGGGGGGTGGGGGGGGGGCAGTCATCTGAATGCAGGTAATAGACACAGGTTACACAGGTTATAAAAGAGAAGATGAAGAAGAGAGACAGGTGAGGTGGTACAAGGGTGGGTTTCTGAGTTCAAAGCCAGCCTGGTCTACAGAGTGAGTTCCAAGTCAGCTAGGGCTACACAGAGAAACTGTCTCAAAAAAAGAGGAGGAGGAAGAGGAGGGAACACTTTTCAATAAAAGAGCATGCTTTCTCTCTCTGAAGATGATGCTCTCTCTCTCAACAGGATGTCCTCCATCACACCTCTCCTTGTTTGGGACACTGGTACTTTGCCACCCAATCCCCTTTCTGCTCATCATAGGCAGAGCTGAGTTTTCACACTGCTCATAGGAGCCGTGACTTGTATTTATGTCTCTGTGAAAGTGTTTGTTGTGCGGTGAAGGTGATAAAGAGCTTCGGTTTGTCCTCCCGGTTGTCACACGTTTAAACATATTTATTACAAAAGGAGAGCACAAAGCTATGAGTGGATCCCTCGGGAGGCAGCTCAGCAGCGTGCTGGCCTTGCAGATTCGGGGGCTTGGACTTCGACCCCTAGAATCCTTGTTTAAAAAACAATTAGCTGCTTCCGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAGATAAATAAATCTTTCAAAAAAAAAAAAAAGAAATTAAAATTTAAAAAAAAAAAAAAAAAAAAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAGATAAATAAATCTTTCAAAAAAAAAAAAAAAGAAATTAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAGATAAATAAATCTTTCAAAAAAAAAAAAAAGAAATTAAAATTTAAAAAAAAAAAAAAAAAAAAAAAACAATTAGCTGTAATCTTTCTTGTAATCTCAATTCTGGGAAGGCTGGAGACCGGATGATTCCTGAGGTCATTGTCCAGCCAGTATCCTAGCCTACTTAGTGAGTTCCAGGGGAGAGAGAGATTGTCTTTAGGGAAAAAAAAGTTAGGTAGTACCTGAAGAATGACACGTGAGGCTGTCTTCTGGCCACCACACAGGAGCACATACACATGTGCACGCGCGCACACACAAACGTGTGCACATAAGTAAATGACTAAACATCTGGATGACCTCTAGACTGCTTTTCTATGCTCATTAACTATATTCACTCAAAATGGGATCTTTCTGACTTATAATTTCCTTTTTTTTTTTTAATTGAAAAGCATTTTTCAGTAAAAATGCAGTGATCTGTGTGTCTGAACAAGGTAGGGTCCAGTCACCAAAGCGGATATGTCTCTACCTCTCAGGGCTCCTGTGCAGGACAAGTAGGCAGGGCAAGTGAAGGCAGAGACCTGAATGATTCATCAGGTCTGTGGCAGGAGGGAGGGAAGAGGTCTGGCAATGCTGCTTGTAGCATTAGCTTTGGGGGATGCCTTTTATTTTTATTTTTTGGCATAGGGTGAGTCTTAAATCCCTGGCCTCAAGTAATTCCCCTGCCACAGCCTCCCAAACGAGTAACTGGGAAACTGGGATTTGTGCAGTCATACCTGGCAGGAGCCTTTTGTGTTTCTTCCGTCTCTGAGCTGTATGTGCAGCCTCTAGCCATGGTTTAAATCTGAGGATCCATCAGGTCTCCTGTAACTCTGTCCATGTCTCCCTGCTGTGTGGTGAAGTGGCTCTTAGTGTGTTCAGAGAAGAAGGAGCCAGAGACCTAATTCCCAATATAGCTGCTAATCCCCTAATTCTCTGACCTCTCCAGTCCTGGGCTGTTTGTCCTTTCTTTCCCACTTGGAACCCGGAGGAGTCACAGGCAGCAGGGATGGAGAGTAAGAAGGTACTAGCAGTTTGTGGCGTTTGGTTTGATTAGGACTTTGAAAGCGCAGGATGCCTAATTTTACAACAAGCATGTTCCCACTATTATTCTACAACGTCACTGACGACTCGCTGGTTGATCTCCAATCCATTATATCACTTTTGACCCAAGTGAAAGTGAACTGTTCTCATAGGTGTGCGGGAAAATGTATGTCTTCTGTGTATCAAAGTGGGTGGTGGCTCTCTTTTCTTATGAGGCCTGTGTATTTCTCAAGCAAAGGATCTGTAAAATAGTGCATTTTCCAAGATAGCTACAAAGTAGATAAAGATAAATAATAGAGAGGAGGATGGAGGAAAAATTAGATTGTTATGCAGAAATAAGATCTGAGGTCTGGGAGTACAGGTCAGAAGTAGAGCATTTGCCAGCCATGAAACAAGGTCCCCATTTGACCCACGAGCCTTATAAATTCTATCAGCTATATACTAATACCACCCATGCAAAAAACGGTAAATCTTTAGACCTTATAGATAGGTGCAGTCTCTGACATTGACCTCAGTAATTATAATTAGAAGTGCATAGTTACTGTATCTTTGTCTTGTTGGGGTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGGTTAGGAAAGAATTCCTAGCATTATATACTCTTGTTGTTTGTGGCATACCTGGGTGAACTTCTATTCAAATATAGTTACAATGTTGAAGGCACCTAGCCATCTGCCTTTTCTTCTTGGTGAGTCTTGAGAGAGAAAAAGTCTCTCCCTTCCAATGTAACTACATGAGATCTAGGCTGCTCACTTTGTCCTTATAAGGCTATCCTGTTTTATCACTTCCTGCTTCAGCTCCTGACTTTTTCCCTCTTCCTCTCTCTGGGCCCTGGGTGGATGCTCGCTCCTTGTGGCAGGGCAGTAACTGTTCACAGCTGTGTGAACGACGGTGGACCAGGCACAGCTTGGAGTTTTAACTTTCAGTTTACAAAGACGCATGTTTGGCTGTTGCAGCAGGCAAGTTGTAACTGGTACTTACTTCTTGTTCCTCTAG
Seq C2 exon
AACCCTGAAAGTCTGCCCCAGCACTTTAGAAGAGGGACCCTGTCTGTGTTAAAGAAGAAGTGGGAGAACCCGGTGGCTGGGGCAGAATTCCACACAGACTCACTGCCAAACAGCAGCAGTGAGGGTGGGCACACAGCGGACTACCCTCCTGCTGAAGTGACGGACAAGCCTGCTCCTGGAGTCAGAGCTGACCGGGAAGAGCACACCCAGCCCAAACCTAGATTTGGATCTCGTCCGGAAGCAGTTATCCAGAGCCGGTATCCTCGCTCAGAGAACAGCCACGATTTTAAAGCCCAGGCCACGGAGAGCCAAAAAATGGAAAACTGTCTGGGAGATTCCAGGCATGAAGCAGAGAAGCCAGAGACGAGCGAAAACACAGAAACTTCAGGCAAAATAGAGAAATACAACGTTCCACTGAATAGACTGAAGATGATGTTTGAGAAAGGTGAACACAACCAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023022:ENSMUST00000073691:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=NA C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types