HsaINT1023989 @ hg38
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1234205-1234680:+
Coord C1 exon
chr11:1234205-1234305
Coord A exon
chr11:1234306-1234528
Coord C2 exon
chr11:1234529-1234680
Length
223 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TACCTGCCTGGGCCCCACAGTTC
3' ss Score
5.95
Exon sequences
Seq C1 exon
GGTGTGCAGCCCCCATGGTGTACCTGGACTGCAGCAACAGCTCGGCGGGCACCCCTGGGGCCGAGTGCCTCCGGAGCTGCCACACGCTGGACGTGGGCTGT
Seq A exon
GTGAGTTCCATGCTTCAGGGAGGGGTGGGCAGGGAAGGGGTCCCAGCTTTCCCAGCTCCCGAGCCCAGGGATCTGGTGGTCCTGGAGACACTTACCCACCTGGAAGCTCCGCCCTGGCCCATGCGTTGCCCTGGGTGCTGCTGGGTGCGCCTGTCCCAGAGGGTGAGTGACATCTGCCCACCCTGGTGTCCAGCCCTGACCGGTACCTGCCTGGGCCCCACAG
Seq C2 exon
TTCAGCACACACTGCGTGTCCGGCTGTGTCTGTCCCCCGGGGCTGGTGTCGGATGGGAGTGGGGGCTGCATTGCCGAGGAGGACTGCCCCTGTGTGCACAACGAGGCCACCTACAAGCCTGGAGAGACCATCAGGGTCGACTGCAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(51.6=94.1)
A:
NA
C2:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(33.9=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCAGCCCCCATGGT
R:
CAGGTGTTGCAGTCGACCC
Band lengths:
252-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains