RnoINT0095719 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214789976-214790459:+
Coord C1 exon
chr1:214789976-214790076
Coord A exon
chr1:214790077-214790307
Coord C2 exon
chr1:214790308-214790459
Length
231 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
CCAGCCAACTTTGTCTACAGTTC
3' ss Score
5.75
Exon sequences
Seq C1 exon
AGTGCCAGGCACCTATGGTATACTTGGACTGTAACAATGCCTCAGTGGGTGACCACGGGGCTGAATGCCTCAGAAGCTGCCACACGCTGGATGTGGATTGC
Seq A exon
GTGAGTCCTCTCAGTTCTAATGCCAACCCTTGTCTACCGTCTTAATCTGCAGGAAGGGTGGGGAGGGGGCAATGTCACAGAGCAGTCAATGGCTTTGCGTCTTGCTGCTCCTTAATGGCTCCTCCTGAGCATTCCCAGGACTGAGTCTGCTTGCTCCGTGTCCTGGAAACCTAACAGGGATGAGGGAACAGGCAGCTGTCTCAGTCCCTGACCAGCCAACTTTGTCTACAG
Seq C2 exon
TTCAGCACACAATGTGTCTCGGGCTGCGTGTGTCCCTCAGGGCTGGTAGCAGATGGGAATGGGGGCTGCATTGCTGAGGAGGACTGCCCCTGCGTACACAATGAGGCCACATACAGACCTGGGGAGATCATTCGGGTAGACTGCAATAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(51.6=94.1)
A:
NA
C2:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(32.8=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGGCACCTATGGTATACT
R:
TGCAGTCTACCCGAATGATCTC
Band lengths:
244-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]