HsaINT1025017 @ hg38
Intron Retention
Gene
ENSG00000123609 | NMI
Description
N-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]
Coordinates
chr2:151282868-151290057:-
Coord C1 exon
chr2:151289593-151290057
Coord A exon
chr2:151282955-151289592
Coord C2 exon
chr2:151282868-151282954
Length
6638 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TTTATTTTTTATAATATTAGGGG
3' ss Score
5.77
Exon sequences
Seq C1 exon
TACCTTATAAAATACATGCAAAAAACTGGTTTTAGAAAGCGTTCCCTAAAATTAGTGTGTACGGAAACTTCAGGTATACTTCTGCTTTCCTCCGCAAAACCACCCCTTTTTAAAAATCGAAAGTGAAATTAGTTTTTTTTTCTGTTAGTGACTAATCATTGGAGACAACCATGTTTAGTATTTGAGCATTGGTTAAATGCTAAAGAAAAATCGCCGTTAAAGCAGTTTTCTTTTTCACTGTCTTTTTCTTTTCGCGGGGAACCCAGCTGTTCCTGCGAGGGCCACCTCCTCAGGAAGACCCCGCAGCTCTCCCGCGGCGCTTCTGCAGGAGGCAGCGACAGTTTCGAGAACCCGGGCCTTCCCCTCCCAGTGCCTCCCGGGGTTCCGGCGTTTCAGGCGCTGCTGTTTTCCGGGAAGGGCAGGCGCGCTGGGCCTTGGGGAGCTGCGCTCGGCGGGCGGACGCGG
Seq A exon
GTGAGTGGGGAGTCCCTTCCCCGGCTGCCACTCCCGCCGCTGGCAGTCCCGGGCTGGAGAGCCGGGGGTGGAAAGGGAGGTGGGAGCCCTCAGCGCCGACGGAAGTGGGACAGCGCCGGAGTTGAGACCCTGCTCCCCGGGAGCTGCCCGCAGCCGAGTCGCGGAGGCCACGCCGCCTTCGAGGGGGCGCACCTGCTCCTGGGCCCGCTGTGCAGTCTCTGGGCCGTCAGGGCTTCGAGCCTTGTCACTTGTTTGCTTTGCTTCATTGAGGAAATTGAAACATAAAGTTATTTGTGTTTCCTCGCTGTTTTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCTCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCAGCCTCAGCCTCCCGAGTAGAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCTGGCTAATTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAACCAGGATGGATACGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTCGCTGTTTTCTCCGAGTGTCTCTGGAGATAGTCCTTAGGAAAACGGATTTCTTAAGAAAACGATTCTTGGTAGGGGCAGTGTTGTGCAGTCATGGCTGGCGTGTCAGAATAGGCAAGGTTTTTCTTGAAGGAGACATCCGAAGGAGAATACTGTGTTTCCAGTCTGTACAACAGGCAGACGTTCTATTGCCTTTCTTTTTGCTGCCACGCATGCATATAGGAAGATTCGATTCTACACGGCCTGGCACCGCAGTTATATGATTGTATTACGGAAATACGGTGATGTTGATTTGTATCAGTTTTTTTAATTCGCTGCCATAACAAATTACATGGCTTTAGTGGCTTAAACACATAGGAACGCGCGCGCGCGCGCACACACACACACACACACACACTCACATACACAATTTACTATCTTAGGATTCTGTAGCAGTCCTACTGAGGTCTCACTGGGTTAAAATCAAAGTGTTGGCAGGGTTGCCTTCCTTTCTGGAAGCTCTTGGGGTGAATCCTCTTTCCATCTTCCGGAGGCCACCTACCTTATTTGGCTCAGCAGCCCTTCCTCCATCTTCAGGGCCAGCAACATTGCGCCTCTGAAAGTTCTTCCGGGGTCACATTTCACTCTTGACTCTTCTTCTGTCTTCCGCTTTCACTTTTAAGTAGCCTCATGATTACACTGGGCTCCCACAGATAATCCAGGATGCTCTCCATATTTAAAAGCAAGCTGATTAGCAACCTTAATTCAATCTGCAGCCTTAATTCTCCTTTGCAATATAAACTAACATAATCACAGATTCTTGGGATTAAGATGTGGACATCTTTGAGGGAGCCATTGTTTTGCCTACTACATGATTGCATAAAAGGAATGACCATACATCCCACTCATGCATAGAGCAAAAGTATCCAGATGCAAAAGATGCCAAAAGGGTTCTGGTGGTGTTAGATAGTAGACCATTTATGCTGAGAGCCTTTATTACAGGCTCTTGGAATATTGGCATTGTCACAATAATAAAAATAAAAAGCAATTAAATAACATTGCAGTTTCTGTCTTCTGAAATGTAATAAGAGGACTTCATATACATGTGATGTCCTGAGTACAACAAATACTTAAGTCAAGATACCACATAATTCTCTAAATGGAGTGTTTTCAGTGTGTAAGCTTATACTGAGAAAGTGCTCTGAATGTCTGCAGGGAGGAGTAGACATGGTCCCAGCCCTCAACATGTTTACTGATGTGTCACGGAAAATGACATAGGTACACACGTAATTAAAGCGCCGCAAAGGAGATAAAGGAGGGGGAGTAACATCCTTTGGGGGAATCAGAAAAGGCTTCGGGAGCTTGGGGAAAATTTGGAATGGACCTTGAAGAACAGTAAGATTTCATTAGATGGAGATTAAGTTTGGGAGAGGAGGAAGGATGTGACAGTTTGAGGGACAGAGGAAAGAAAAGGAACTATCCAAGTGTTCAGTGTGGTTAGGGAACTGGGTTGAGGAATTGACTAAATAGGACGGGAAAGTGAGTTGGAGTTAGAATGTATCAGACCATGGCTGACCATTAAGAAGATTTTGCAGTTGTTGATACAATAGCGATATATATGTATATATGTATGCGTGTGTGTGTGTGTGTGTGTATGTGTGTGAGAGAGAGAGAGAGAGATGTGGTTTAAATATATATATACTTATATATATATATCGTCTCAAGGCATCTCAAACTTACAGAAAAGTTGCAAGTACAGTAAAACAACTTTTCCTTTTCCTAAATTATTTAAGAATAAATTTCCAATCTGGTGACCTATCATCTTTCATTATATACTTGAGTATATATTTCCTACAAAAAAGATGTGCTCCGACATAACCACAATACAGTCATCAAAATCAGGAATGTGGAGTGCTACGTTACTACAATTTAATAATCAGATCCAATGTGAATTTCACCAGTTGTCCTGATAGTGTCTTGGATAGTGTAGGGGTCAAGGGAAAACTTCCTCTTTGCTCTCTGAAGGGCAAAGGCAGATTAAAAAGGAGAAATGGCATACAAATTTATTAATGTGCACAGGGGAAAAAAATCACATAGTGATGATACTGCACAATGGGGTACAGATGGTTATATTCCCTACTTTTTAGGGGAAAGGGAGATGTGGAAGTGTGGATGATTATAGGGGGTTAGTAAATGATTTTTAAAGGAATTCAAGGGACTCGAAGAACATACAATGGCCTTGGACAAAGCCTGTTGGGCTTGCAGAACAGACAGTGGTTGTAACCCAGGTTTGTTGACAGACTTCAGTCTTCTTTCTGTGATATGAATTCAGAATTAAAAACTCAGGGAAGGGACTAGAGGTAATTGTTCTGTTTTCTGGCAGGTCCCACATTTAGGCAGATAGGAGAACATCAGTGCACCTTCATCCTGTGCTTTGGGAGAGACAGAGGAGGAGGAGGGGGAGGTCAGAGAGACCTTGAGCCATCTTCAGTTCACCATGTCAAAATGCCATACTTCCGGGTATCAGTTTCTGAGCCCCAGTGATAGCAAAAGGATCCAGTTGAGGATCATGCTTTCTACTTAGTTGTGAGGTCTCTTTAGTCTCCTTCAGTATGGACATTTCTTAGTCTTTCCTTGGCCTTCTGAACTTGAAACTTTTGAAGAGAACAGGGCAGTTGTATTGTAGAACCCCTCAATTTGAGTTTGTCTGATGTTTCCTCATGCTTAGATTCAGATTATGCATCTTTGGCAGGACTGTCGTCGAAGTTACATTGTGTTCTCAGTGCACCTTGTAATATGTTACATTATTTTGATTTATTCCATTATTTACTTTGATTATCTCATTATGTTGATGTCTGCCAGACTTCTCCAGTATAAAGTTACTCTTTTCTTCTTTGAAATTAATAAACATTTTGTGGGGAACTATTTTGAAGCTAACTAAAAATTCCTTTCTTCATCAAAATTTCTAATTTATCTGGACTCAGTTTTTTACTTTAATCAACAGATTTAATCATTACTACCATTATGTATTTTAATCTTTAATTTATCCCCAGATTTGGCCACCGAAAACCATCTCAAGGTGGATTCTGTGTCGTTTCAACATGTCATCATCATTCTTTAAGCATTTCCTTGCTTTTTGGCATCATAAGATGTCCCAGGCTCATCTTGCAGTTTTTCTATCCTGGTTTTGGGATCAACCATTTCTCTAAAGAGTCCTGGTTCCTTTTGGTGGAGAATAGTATTAGAAACCAAAGTCTGGGTGCTGAGTGTGCTCATTGCTCATTGTGGTTGTATCTGCTCTCCCAGGCCTTCTCAGCAGACAGAGCTAGGGTATATATGTATTTGTATATACACAAGATACACACATAGGCATTGCTTTTTTTTTTTTTTTTTCTGAGATGGAGTCTCACTCTGTCGCTCAGGCTGGAGTGCTGTGACGCAGTCTTGACTCACTGCAACCTCTGCCTCCCGGCTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGATTACAGGTGCATGCCACCATGCCTGGGTAATCACACATAGGTATTTCTATCTGTCTGTCTATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTCAATCATCAATCAGAAACCACAGCTGCAGGATTACATTGAAATCTAGTTCCAATCAACAGTATTTATTCTTGTTTTCTCCATTTCCATATTTATAATTATCTTCTCTGACGGTGAAAAACTTGGCTCCTATTATCCTCCATATATTTACTTACTTGATCAATTCTGTGTATGTACTTTTGGCCACTGGAGCCCTTTCAGTTGGGTCCCCATGTCCCTTTCACATACTCCCATCATATTGTATGTGTTTGTGCATGTGTTTTAGTGCTTTTTACTTTTCTGGCACTACAAGATATTCCAGGCTTATTTTGTATATTTTATACCCCAGACCTAGAATCAGCCATTGCTCCAATGAGCCCTGGTTTCTTTTATTGAAGAATATTATTAGAAACCAAGATCTGGGTGTTATGCGACTCTCCTCTTTTTTTGACACTCCTGTGTTCATTAAACTAAGACATAGCTAAGTTTTTGCTAGTCTTCTATTTTATTTTTAAGGAGGAATAGATGTCTTTTATTTCTTTTTCAAGAATATTGAGAATTTAGCCACTTGAAATCTTGGAAAATTATATGGCAGACTGTTTATTAATGTGTATCTAAAAACATAGAATCATGATATCCTTTGTCCCATTTTTGATCTGAGAGTTTTTCATCTCAGTAAATTCATATGTAGGCAAGAGTTCTTAAATTTTGTGTACCATGGATTCCTTTGCCAGCTTGGCAAATCCTATGGGCCTTTCTCCAAAAAAAAAACATTTAGTCAATGCCTGTGGGGACAGGCATGGTGGCTTATCCCAGCACTTTGGGAGTCCAAGGGGGGCGGATTGTTTGAGCCCAGGAGTTCGAGACAGTCTAGGCAACTTGGCGAAAACACATCTCTACAAAAAATACAAAAATTAGCTGGGCATGGTGGCACATACCTGTAGTCCCAACTACTTGGGGGGCTGAGGTGGGAGGATCACTTGAGTCAGGGATGTTGAGGCTGCAGTGAGCCGTGTTCATGCCCCACTGCACTCCAGCCTGGGCAACAAAGTGAGACCCTATCTAAAAAAAAAATTAAATGCATAAAATAAAATACATAGAATTACAAAGTAAATCAATTGTATTGAAATATGACTGGGATTATAGGCACCTGGCACCACGCCCAGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCTTAACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGACATGAGCCACCGCGCCCGGCCAGAAATCAATTGTATTGAAATATGGTTATCAGAATATTTAAAAAGCAAATGTTTGATATAGTGATATATATCAATGTATTACAATATATTACAAGACCTAGTGGTGAGGTTAGTAACTAATGTAGAAGCAATGTTAAACACAAACTATTTTAGCATATCTGCAACAATATTCTATGAAACTATCTGTGCTTTCTATTGGTGACTATCACAGGTGCTGTGAATACTACTGTAGTTTGTTACCATATTCATAATTGAAGAGAATGCTAAGCTTCAATTAGAGGTTATTAGAAATAAACATATAATTTCTTCCCAATCCATGTTTATGGACCCAGCAGGAGAGTTAGTGAAAGCTTCAGGTAAGAACACCTGCGTAGAGAAAGCATATGTTGGAGGCCTCTTGACTTTGTTTACATTTGGGGAGAACAATAGGGAGAATTAAATATTTTAATCAAAAACTTTGAAAAACGTTGGAAAACCAAAATAGTATTCATTTAAAATGGAGCATGATATTATGGTTGGAATGTGAACTACAAAGGAACATTAATGTTCATTACTTTCTATATATTATTTTGTTGAAAAGCAAAGGATTTTTAGAATCTTTTTATATATTATAGGTGTGAAAGTTATTTGAAATATTGGCCAGGTGCTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGGGGGTGCATCACTTGACAAGAGTTCAAGACCAGCCTGACCGACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCAGGTACCTGTAATCCCAACTACTTGGGAGGCTTGAGACAGGGGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCACCATTGCCCTCCAGCCTGGGCGACAGAGAGAGACTCTGTCTCAAAAAAAGAAAAAAAAAAGGAGTTATTAAAATACAGACTTTGTTTGGATATAAGCCATATGATAATAAAGCCTTTGATGATGGGAAAAAAAGATATAGCAAAGAAGAGATGTTTCTTCCATAAAAGGGTAAAAGTTCTTATTTCTTTGTTCTTAAATTTGTGTATATATGCTATGCTTATAATATTTATTTTTTATAATATTAG
Seq C2 exon
GGGATCATGGAAGCTGATAAAGATGACACACAACAAATTCTTAAGGAGCATTCGCCAGATGAATTTATAAAAGATGAACAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123609:ENST00000243346:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.951
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF122693=zf-CpG_bind_C=PU(21.0=77.8),PF079896=Microtub_assoc=PU(31.0=66.7),PF150351=Rootletin=PU(14.3=37.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains