HsaINT1025806 @ hg38
Intron Retention
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17609655-17612330:+
Coord C1 exon
chr11:17609655-17611423
Coord A exon
chr11:17611424-17612161
Coord C2 exon
chr11:17612162-17612330
Length
738 bp
Sequences
Splice sites
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
3' ss Seq
TTCCTCCACTCTGTACCCAGCCA
3' ss Score
6.58
Exon sequences
Seq C1 exon
GTGTGGAGCCAGCAGTTTGGGTTCCCACAGAGGCCCTTGGCAATGAGACCCTCCCTCCCAGTCAAGGGTTGCCCACTCCCAGTGATGAGGAGCCACAGCTGTCACAGGAAAGCCCCAGGACCCCCACCCACAGGCCAGCCCTCACCCCAGCTGCCCCACTCACCACAGCCCTGAACCCACCAGTGACAGCCACTGAGGAGCCAGTGGTGTCTCCAGGCCCCACCCAGACCACCCTGCAGCAGCCACTGGAGCTCACTGCATCTCAACTCCCCGCCGGCCCCACGGAGTCCCCAGCCAGCAAGGGAGTGACTGCCAGCCTCCTGGCCATCCCCCATACACCAGAGTCCTCATCCCTCCCTGTTGCACTGCAGACACCCACACCTGGCATGGTGTCAGGTGCCATGGAGACAACAAGGGTGACTGTGATCTTTGCAGGAAGCCCTAACATCACAGTCTCCTCCCGGTCGCCCCCTGCCCCTCGCTTCCCGCTCATGACCAAGGCTGTGACAGTCCGAGGCCATGGCTCCTTGCCTGTTAGGACGACACCCCCACAGCCCTCCTTGACAGCAAGTCCCTCCTCCAGACCTGTGGCTTCCCCTGGAGCCATCTCCAGGTCCCCCACCTCCTCGGGATCCCACAAGGCTGTGCTGACACCTGCAGTAACTAAGGTCATAAGCAGGACAGGGGTCCCCCAGCCCACCCAGGCCCAGAGTGCTTCAAGTCCCAGCACCCCTCTAACTGTGGCTGGAACAGCAGCAGAACAGGTTCCTGTCAGTCCCCTTGCAACCAGGAGCTTGGAGATAGTGCTATCCACAGAGAAGGGCGAAGCCGGGCACAGCCAGCCCATGGGCTCGCCTGCCTCCCCACAGCCACACCCACTCCCCTCTGCACCACCCCGCCCAGCCCAGCATACCACCATGGCCACCAGGTCTCCAGCTCTGCCCCCAGAGACCCCAGCTGCCGCCAGCCTGTCAACAGCCACTGATGGGCTGGCAGCCACACCCTTCATGTCCCTTGAGTCAACTCGTCCCTCCCAGCTCCTCTCTGGCCTGCCTCCCGACACCAGCCTGCCCCTGGCCAAGGTGGGCACATCTGCCCCAGTGGCCACACCCGGCCCCAAAGCCTCTGTCATCACCACTCCACTCCAGCCACAGGCCACGACTCTGCCTGCTCAGACACTTAGCCCAGTACTGCCTTTCACTCCAGCAGCAATGACCCAGGCGCACCCACCCACTCACATAGCACCCCCAGCAGCAGGCACAGCTCCAGGCCTGCTGCTGGGAGCCACATTGCCAACCTCTGGAGTCCTGCCTGTGGCTGAGGGCACGGCCTCCATGGTATCTGTTGTCCCACGAAAGAGCACCACAGGGAAGGTGGCCATCCTATCCAAGCAAGTGTCTCTGCCCACTTCCATGTATGGTTCTGCAGAGGGTGGGCCCACAGAGCTCACGCCTGCTACGAGCCACCCTCTCACGCCCTTGGTGGCTGAGCCCGAGGGAGCCCAGGCAGGCACAGCTCTGCCAGTGCCCACATCCTATGCCCTGAGCCGTGTCTCAGCCAGGACGGCCCCCCAAGACAGCATGCTGGTTCTGTTGCCTCAGCTGGCTGAGGCCCATGGAACCTCGGCAGGGCCTCACCTGGCAGCAGAGCCGGTGGACGAGGCCACCACAGAACCATCTGGGCGCTCAGCCCCAGCCCTGAGCATCGTAGAGGGTTTGGCGGAGGCTTTGGCAACTACCACTGAGGCCAATACATCCACCACCTGTGTT
Seq A exon
GTGAGTGATTTGCCAGGGTTCTGGCCACCCGTATGTGACCCTTCCCTTCATCCCTTCCTCTTCCCTGCTAGATGGAGTTTTAGTCGCTATCCTCATACCTGCCCCATGCTCCTGGTCCCTGAAAAATTCTTCAGTCTCCTATTGGCCCCTGATGCCATAGCAGGGTTCCGCCTGGCCCATCTAGGCCCTGGGGGGCTGATTGGATGGCCTAGTGTGATGCCCAGGTGACAATGTGTGTGTGCTAGTGTGTGCCTGTGTGAGACTGCTGTGTGTGTTTGTGTTCACATGTGTGAGAAAATATGAGCGCTCCTGTATCTGCATGTGCTCTTGTGTGTGTGAGGAATGGTGTTTGAGACATCCTCATGTGCATCTTTGTGCCTTTGTGAGAAACTGTGTGTGTGTGTGTGTGTGTTTGTGTGTATAGGCTTGTGCAAGTATGCTAGGGTTTCTGTGAGTGTGAGCTAGTGTGTATACATGCCTGTGTACCCAGACCTCTCAGCGCAGGCCAGGCAGATCTGCAGAGGTCTCAGGGAATAGGTCCCTGACCCCCGAGCTCACACTAAGTGCATCGCCAGGCCCCACATGGCTTGTGGTGGGTAGGGGGTGAGGGCCTCTTTCCCTAGAAGGTCCCCTGCCCCGCTAGGACCTACATGTGGGAAGGATCTGGTGCCATCACAGCTTGCAGGGTGGGCTGTAGCTCCTTGATGGTCACTCACACTTCCTCCACTCTGTACCCAG
Seq C2 exon
CCAATCGCCGAGCAGGACTGCGTCCGCCACATCTGCCTGGAGGGCCAGCTGATTCGCGTGAATCAGTCCCAGCACTGTCCCCAGGGTGCTGCTCCCCCTCGCTGTGGGATCCTGGGCCTCGCCGTGCGGGTGGGTGGGGACCGCTGCTGCCCACTCTGGGAGTGTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162:ENST00000342528:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.861 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAGGCACAGCTCTG
R:
CAGTGCTGGGACTGATTCACG
Band lengths:
344-1082
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains