HsaINT1025940 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31132245-31133168:-
Coord C1 exon
chr12:31133117-31133168
Coord A exon
chr12:31132329-31133116
Coord C2 exon
chr12:31132245-31132328
Length
788 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AATCAGTATTTTCATTCTAGGTG
3' ss Score
7.25
Exon sequences
Seq C1 exon
CCTGAAGGTATTGAAAAGGAAAGGACCCAGAGTTTCCTTATCTGTACAGAAG
Seq A exon
GTAAGAGGATCTTTTAGGGAGTCAAATTAGTCCTAAATAAAATTCACCAAAAGAATCAGTTCATGTCCTCTCCTTCCACATGAGTCCATGTGCCCTGTGATTTCACTTTAAATAACTCGTGGAGGATTCTTGTGTTTCATGCTTTATCTTTATGGTATAATTTTAGCCATCAAAAAGAATATTCAGGAGGTGGTTTTTAGTTCACTTTCTGAGGCTGGTCTGCTCCTATCTATTTTTTTTTCCATCATGTGTACTCTTAGCTCCTCTTATGATATGGTTGTCACACAATATTGGACAATGAGATATTAGGATTGAGGCCCAATAGCACATAATATAATCTTGGCTTTTGTACTCTTAGGAGAAAATAACCCATAGATACATCACTGCCCCTGCACCTCAGTCTCCGGTTTTATGGCCATGAGGGGTATTATTTTACCTGGTTGATGGTGATCTGATTATACTCCTTCATCTGAGTCTTCAAGCTTTACCTTTTGTGTGTGTTGTTTTATGTGTTACAGTCAGTGTAGTTTTTACATTTTTTCATACATAAATAGTTCAGGCACTAAACCAGTGAAGAACGGGGGCCACAATCTAACACACAGATTTATATGCCATTTTCTGAATGTACTATTATCCTAAACTGGGTCAAAACTCCAAATTCATCTCCTCTAATAAACAACTTGTAAAATAAAAATAAGTAATGGAATCTTATTTCCAATATGTTTATCCCCCAAATCTGCTGATATAAAGAAGCCATCACATTTTTTAAATCAGTATTTTCATTCTAG
Seq C2 exon
GTGCCAAAGCCTCCAAGCAGGGAGTTTTGGACTTGCCAAATGATGTAGTAGAAGGGTCAGCCAGAGGCTTTTTCACTGTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains