HsaINT1025947 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31114396-31114927:-
Coord C1 exon
chr12:31114837-31114927
Coord A exon
chr12:31114465-31114836
Coord C2 exon
chr12:31114396-31114464
Length
372 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
CCCTAACAATTTCTTCAAAGCTT
3' ss Score
4.48
Exon sequences
Seq C1 exon
ATACACTGGAATTCGCAATAAATCCAGTATGGTGGTTATAGATGTAAAAATGCTATCAGGATTTACTCCAACCATGTCATCCATTGAAGAG
Seq A exon
GTAAATAATAGAAGCCTAATCTTTCATCACAAAGACAGCTACATAGAGTATAAAGATAAAATAAATACTTGTTTAGCCGTAGTTTAGCAAAACAAAACTATAGAATTCTTCTTCAACATTCACCTTTGTATTTTTGCGCTAACACTGGAGAGCTGGTGTACTTCATTTGTACCAATTAGCAGTCAGTATTTCCCATGGTTCATCATATGTTTTTCTTTAGTTGCTACCTGTGTTTATGAAAACATCATGGCACCAAGGAATGTTCCATAAAACAGAACGTGACGTAGAAAAGAGTGGACATTCAGTTCTGCAGTGGCGCTGTCATTTGTTCTAATATCTATTCTCTATCCTTCCCTAACAATTTCTTCAAAG
Seq C2 exon
CTTGAAAACAAGGGCCAAGTGATGAAGACTGAAGTCAAGAATGACCATGTTCTTTTCTACTTGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PU(28.9=71.0)
A:
NA
C2:
PF076779=A2M_recep=FE(28.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains