HsaINT1026474 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149896711-149898506:-
Coord C1 exon
chr5:149898363-149898506
Coord A exon
chr5:149896777-149898362
Coord C2 exon
chr5:149896711-149896776
Length
1586 bp
Sequences
Splice sites
5' ss Seq
TTGGTGTGT
5' ss Score
3.29
3' ss Seq
GCCATTTTGGGTCCTGGCAGAAA
3' ss Score
6.56
Exon sequences
Seq C1 exon
TCTTTGACTCAATTTCTGGGCTGGTCTGTCTTAAATCCTGACACCTATGAGTCAATGAATAAACTTGAAAATAGGAAGGATATTTTCCAGGACATAGTAAAATATCATGTGAAGTGTGACAATGAAGAAATTCAGAAAATCTTG
Seq A exon
GTGTGTAATGTTCTTTACTTGTTTCTACTCTAATACAGACTGCGTCTCAGAGATGTGGCCAGATTAAGGCAAAACTTGCAACTCCATGAGGGCACAGCCTGGGCATGGGTTTGTGCACTGTTGTGTTCCTTCCTGCCTAGCACAGGGATGCAGCAGCCCTCAACATTTAATGAATGAATGAATGAATGAGTGCATGAGCAGATGAGTGCCTGAGAGTGGTACATAACGACTGCACTGTGTGGCCTGGGGACAGCTATTGCTTGCAGAAACACCTCATTCTTGGGGTCAGATGTTGGCTTGACAGCTCTAGAAACTCCATTTTTCACAGTGCTCAGGGATGACTTGCTACTGGAGACAGAGTCAACCAGCCATAGCCCCTACTCTGAGAGGAAGCTTTATCTGGAAGACCAGTAGACAATTATCAGTTTCTCAGAGCCTCCCTCCTGTGGGGTCAGCTCACTTAAAAGACCCTATTAAGTTGGGTGCAGTGGCTTACACCTATAATCTCAGCACTTTGGGAGGCCAAGGTGGTCAGATCGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACACAGCGAGACCCTGTCTCTACCAAAAAAAACCCCACAAAAATTAGTCAGGCATGGTGGCGTGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCACCTGAGCCCATGGAGGTCAAAGGCTGCAGTGAGCCGTGATTGCCACACCATGCTTCAGCCTGGCTGACAGAGTGAGACCAGAAAAAAAGAAAAAATAAAGACAGGCTAATGTTTTTAGAGGGCATTTCTTAAGCTGGGAAGATACCACAACAAATTTGATCATTTCATTCCAATAACTGTTAAATTCAGAAGAGAAAACATCCCGTTTAAATAAATTGCCTCATGGTTTGCTTGACTCAGTCCACAGTTTCAGCCAAAGAATGGGTATGTGCAACCTATCGGGGCACAGCCTCGGTGAACCAGTTACAAGTTAACAAATTTTGCTCTGGGTCAAGAAATCAGGAGCAAGTAACTGGGTCCAGTTCCCCCTCCTCTGGCACATGGGGACACAGGCCCAGAGAGAGAAGGAACTTGCCTCAAGTTACACAGTAAATGAGAGGAAGAACTAGGACTATGTCCAAGGCCTCCTTACTCCCAGTCAGTAATAGTAACAATGAAACTATCAACAACAACATTAATTTATGTTAGTGCTTACTATGCGCCAAGCACTGTGCTAAGTGCTTTATATGGATTATTTAATTTTACATATGTTACTTGAGAATGACTTTTCACAATTAAATTTTAATTCACCAGTTAAGTATGTTTATTATCCTCAACTTACAGATGAGGAAACTGAAGATCAGAAGCATTAATAACACGGCTAGTAAGTGGTAGAGCTTGAATTTGAATGCAGGTCTCTATGGCTCTAAAGCCCAGGACCTTGTGCATCAATGGATGTTAAATGGAATCCTCTTTGAGCTGGTGGTTCTGTTGCAAGGACTTTGGAGGAAGGAGATAAATGGGAATGGAAACGCGGAGGCATGTTGTAACCTATTTTTTTTCCCCTGCCATTTTGGGTCCTGGCAG
Seq C2 exon
AAAACCAGAGAGGTGTATGGGAAGGAGCCATGGGAGTGTGAGGAAGAGGAGCTGGCTGAGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCAATTTCTGGGCTGGT
R:
CAGGATCTCAGCCAGCTCCTC
Band lengths:
206-1792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains