BtaINT0109225 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108841561-108842088:+
Coord C1 exon
chr6:108841561-108841704
Coord A exon
chr6:108841705-108842022
Coord C2 exon
chr6:108842023-108842088
Length
318 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
TAGCACGTCTTCTCTCCCAGCCA
3' ss Score
4.95
Exon sequences
Seq C1 exon
TCTCTCACACAGTTCCTGGGCTGGTCGGTGCTGAACACTGACACCTACGACAAGATGAACAAGCTGGAGAACCGCAAGGACATCGCCCAAGACATGGTCCTGTACCACGTGAGATGTGACAGAGAGGAAATCCAGCTGATCCTG
Seq A exon
GTGCGTCCGGCTCTCCCACGGGGAGCAGGGGTGTGGCCTAGACCTGCACACACCACACCGCCCGGGGCTCCCTGCCCGGCCGCAGGCCCCTAGCAGGGACCCCAGCCCCTCTGGTCGTGCTGTGTGAGGGCTCCACCATCACCGTCCAGGCAGAGAGCTTGGACTGGTGTGGAGGGAACAAGAGCCGGCCCGAGGCCGCCGCCACCGTTTCTGAGGCCAGAGGCTCCGGCTGGGGCTCCCCGAGGGATCACTCAGTCCCACAGCCACGAAAGGTGCAGTTGACGCCATCACCGTCTCATAGCACGTCTTCTCTCCCAG
Seq C2 exon
CCAACCAGAGAACGCCTCGGGAAGGAGCCTGCCGACTGCGAGGAGGACGAGCTGGGGAAAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480:ENSBTAT00000052174:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCACACAGTTCCTGGGC
R:
CAGGATTTTCCCCAGCTCGTC
Band lengths:
210-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]