HsaINT1026480 @ hg38
Intron Retention
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149883429-149884579:-
Coord C1 exon
chr5:149884479-149884579
Coord A exon
chr5:149883537-149884478
Coord C2 exon
chr5:149883429-149883536
Length
942 bp
Sequences
Splice sites
5' ss Seq
CAAGTTGGT
5' ss Score
2.11
3' ss Seq
TAGACTGATATGTTTTGTAGGAA
3' ss Score
5.09
Exon sequences
Seq C1 exon
AGCCTGAATATCTTTCAAAACCTCAATCGTCGACAGCATGAGCATGCCATCCACATGATGGACATTGCAATCATTGCCACAGACCTCGCCCTGTATTTCAA
Seq A exon
GTTGGTATATCTTCTCATTCTAATAGTAAAAGCAACAATGATTATATGTATGCATATATATATATACACACATATATATACATATATACACATATATATACACACATATATACATATATACACATATATACACACATATATATACATATATACACATATATACATATATACACATATATACATATATACACATATATACACATATATACATATATATACACATATATATACACATATATCTACACATATATATGTGTGTGTGTATATATATATATATATTTTTTTTTTTTCTTTTTTGAGACAGGATCTCACTCTGTTGCCCAGGCTAGAGTGCGGTGGCACCATCACAGCTCACTGCTTCCTGGGCTCAAGGGATCCTCCCACCTCAGCCTCCTGAGTGGCTGGGACTACAGGAACACCACCACTCCTGGATAATTTTTTAATTTGCTGTAAAGATGGGTTCTCACTATGTTACCCAGGCTGATCTAAAACTCCTGGTCTCAAGCCATCCTTCTGCCTCAGCCTCCCAAAGTATTGGGATTACAGGCATGAGCCACTGCACCCAGCAACAATATAATAACAATAATAATAACAAACATCATAGTTCCAATTAATTTAGCATATACTATGTGTCAGGCACAACACGTGTGTTATGGACACATTGATTCTTGCTACAAGCCTGTGAGTTAGATATCATTACCCCCGCTGTACAGATGGGAACACTGAGATTCAGGACAAGAGATTTGCTAAGAGTAGATAACAAATCAGTGGCAGAGACTTAGGTTAAACCTAGGTCTTCACTCCTGGGCCTTGGCTCTTTCAACCTTGTTTTGTGAATTTTGTTGATTTAATAAGGCTCCATCTGAATCAGCCAATGTTAGCAGCTCAGGTGTTGCCTTATTCTAAGACTTGCTCCCTTTACTAGACTGATATGTTTTGTAG
Seq C2 exon
GAAGAGGACGATGTTCCAAAAGATCGTGGATCAGTCTAAGACATATGAGAGTGAACAGGAGTGGACACAGTACATGATGCTGGAGCAGACACGGAAGGAAATCGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915:ENST00000255266:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.3=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGAATATCTTTCAAAACCTCA
R:
ACGATTTCCTTCCGTGTCTGC
Band lengths:
206-1148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains