GgaINT0066438 @ galGal3
Intron Retention
Gene
ENSGALG00000015373 | Q802E5_CHICK
Description
NA
Coordinates
chrZ:52375779-52377379:-
Coord C1 exon
chrZ:52377279-52377379
Coord A exon
chrZ:52375887-52377278
Coord C2 exon
chrZ:52375779-52375886
Length
1392 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTTTTTTTTCCTCAAAGAAA
3' ss Score
7.44
Exon sequences
Seq C1 exon
TCACTGAATATATGCCAGAACCTCAACCGGAGACAGCATGAGCACATGATTCATCTGATGGATATTGCCATCATTGCAACAGATCTGGCACTGTATTTCAA
Seq A exon
GTAAGTTGGTCACATACACTGTGGGTGAAGAGCTGCATGCAGCTGGAGCTGTACAAAGACAGAATGTGATGTTTTGTTCTGAGAGCCCCTCTGGGTAGCAAACCTCTTCACAGACATTGTCTCCAGAGGGTTGTTTTTAATGTCGATACCAGAGCTGCCAGGAAGAATTCAAATTGTTCAAGAGAATGTTGAACTTCTATTAATTACATCACATATGTGACTATCAGCCTTCTGTCTCCAACAAGGCCCCGTATGATCCCCTAACAGAAAGACAGAGATGATGTTTTTTTATAACACTTCAGTACTAACAATACTTACTAATGGTCAATGTATACAATGGCCAGGACTCCATTAAGTTCTCTGAGAGAGCAACACAGCTCAAATAATAAGTGGTCCACTATAGGTGAACACTCAGTTTATAGTCTGTTTCACACACTAAAGCCAAAAATGCCCAAGACCATGTTGTCACATGCACTAATTTCCTGGGGTGTAAGGCTGGAAGTCTACGATATTTGACATCTTAAGTAGCAAAGAACTTTCAAAATGTGTTTTCAAATACAGGGCCAAGACCAGAGGTTGCTTCTGTGTTTTACACTGAAGGATGGTTACACACAGTATAAACAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTATGAGGAGGGAACCCTAACCCCAACCCTACCAACCCTAATCCTGTTCACTTACTTTGGAGGCTTCGTGGTTGAATGTGAGCAGATATCTGCACTTCCCTACCAGGTAGGAACTAGCTAGTCTTTGCCATCTGTACCTAAAGACTTAGTTTAGATCAGATTCCAGGTGAAAGAGTGTGGACAGAGCATGTAGTCAAGCTTCTTTGTGGATCTGGCCTAAAGGTCCTTCTTTGTCACCAGCACTGAACCAGCAGATTTTTCAAGATTTCATGCCACTCAAAATATGGGTGTATGATATATAAATCCCTCCCTGCAATCTGCTTCCCATATTCTGGTTTATAACTAATATTAACAAAATCAGACTGAGCAACAGGTGGTCTTACAGGTGCTCCAACACCTGAGACAGCTCTAAGTTTCTGCCATTTGCTTAACATTCAGCCAAAAAGCCTTCTAGTGTTGTCAGCAAAGCCAGAAGCCCTTCTCAGTATGCATTACTTGAGGTAGGACATGCTTTCAGGCTTCCTGCTCCAGTCTCACTGTTATACTTTTTATTCCTTTAAGCCATTTACAATAGTTCCCTCTACTTAAGGGAGACAAGTGATGATGCCTGGCTTTTCTGGGGGCTTCCCTGAAGACATAACAGCCAGGAAAATGTCTACTGGAAACCCAGACATCTGTTTTTAACACATCTGCTTCATCCTTTTGGAACTTTTTTTTTTTTTTTTTCCTCAAAG
Seq C2 exon
AAAGAGAACGATGTTTCAGAAGATCGTTGACGAGTCTAAGACATATGACAATACAACTGCCTGGACTGATTACCTGTCTCTGGAGACGACAAAGAAAGAAGTTGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373:ENSGALT00000032798:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(16.5=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGAATATATGCCAGAACCTCA
R:
ACAACTTCTTTCTTTGTCGTCTCCA
Band lengths:
206-1598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]